View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1972_low_1 (Length: 657)
Name: NF1972_low_1
Description: NF1972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1972_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 10 - 603
Target Start/End: Original strand, 1558868 - 1559449
Alignment:
| Q |
10 |
acatcatcataaatgttggagttaagattagataagactatcctcattaatttataaacgacttcattagtttacctcttattaaattcggagaatttta |
109 |
Q |
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||||||||||||||||||||| |||||| |||||| |||| |||| |||||||| | |||||| |||||||| |||||||||| | |||||||||||| |
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| T |
1558868 |
acatcatcataaatgttggagctaagatcagataaaactaccctcgttaatttaggagcgactttattagtttgcctcttattacactcggagaattttg |
1558967 |
T |
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| Q |
110 |
aaaactattctaaaataactgtctaca-tgcatacataaaactatcaaccatttgtcaaataacaaaagccatcaacctcaccaacaacagtttatttac |
208 |
Q |
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|||||||| |||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1558968 |
aaaactatcctaaaatagctgcctactctgcatacataaaactatcaaccatttgtcaaataacaaaagccatcaacctcaccaacaacagtttatttac |
1559067 |
T |
|
| Q |
209 |
aatataatttatgtccaactcttcatccaccaaagggttatggacccttcattttctggcttctaaatcctctctctattaagtaggtttatcgcctcct |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1559068 |
aatataatttatgtccaactcttcatccaccaaagggttatggacccttcattttctggcttctaaatcctctctctattaagtaggcttatcgcctcct |
1559167 |
T |
|
| Q |
309 |
caaaaattacttgaagggtatctttgaagggtatctttggtgacatgtcatgatgttaggatacacagctaacttgagtgttggaatctctcttaccggt |
408 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559168 |
caaaaattacttga-------------agggtatctttggtgacatgtcatgatgttaggatacacagctaacttgagtgttggaatctctcttaccggt |
1559254 |
T |
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| Q |
409 |
acaaccccacattatttggttgttacttaagaagctttcacaccatcttagacccaagatacgaaatctcaaggatatataagacactccaccttataga |
508 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559255 |
acaaccccacattctttggttgttacttaagaagctttcacaccatcttagacccaagatacgaaatctcaaggatatataagacactccaccttataga |
1559354 |
T |
|
| Q |
509 |
caggtgcattagacgtgagcacatattattggtggctttacattaaacaaattaatgcaacatatgtcaatacttagaggcagtttagatgtttt |
603 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1559355 |
caggtgcattagacgtgagcacatattattggtggctttacattaaacaaaataatgcaacatatgtcaatacttagaggcagtttagatgtttt |
1559449 |
T |
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