View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1972_low_10 (Length: 258)
Name: NF1972_low_10
Description: NF1972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1972_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 247
Target Start/End: Original strand, 39733051 - 39733280
Alignment:
| Q |
18 |
caaggcaccaatgtccaaaactggtgtctttcctacggtgttcttcaactgcaatggacccattgatggtcttttgataccatatttttccatgtcaccc |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733051 |
caaggcaccaatgtccaaaaccggtgtctttcctacggtgttcttcaactgcaatggacccattgatggtcttttgataccatatttttccatgtcaccc |
39733150 |
T |
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| Q |
118 |
aaaatgaaccatgtcaaaatcaacaaaagtttgtctacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaata |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733151 |
aaaatgaaccatgtcaaaatcaacaaaagtttgtccacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaata |
39733250 |
T |
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| Q |
218 |
tttctcttggtagcacatgaacctgtggat |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39733251 |
tttctcttggtagcacatgaacctgtggat |
39733280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 247
Target Start/End: Complemental strand, 39839907 - 39839678
Alignment:
| Q |
18 |
caaggcaccaatgtccaaaactggtgtctttcctacggtgttcttcaactgcaatggacccattgatggtcttttgataccatatttttccatgtcaccc |
117 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839907 |
caaggcaccaatgtccaaaaccggtgtctttcctacggtgttcttcaactgcaatggacccattgatggtcttttgataccatatttttccatgtcaccc |
39839808 |
T |
|
| Q |
118 |
aaaatgaaccatgtcaaaatcaacaaaagtttgtctacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaata |
217 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839807 |
aaaatgaaccatgtcaaaatcaacaaaagtttgtccacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaata |
39839708 |
T |
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| Q |
218 |
tttctcttggtagcacatgaacctgtggat |
247 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
39839707 |
tttctcttggtagcacatgaacctgtggat |
39839678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 31290622 - 31290573
Alignment:
| Q |
193 |
aattcaaaagttgatattccaaatatttctcttggtagcacatgaacctg |
242 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||| |||| |
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| T |
31290622 |
aattcaagagttgatattccaaatatttctcttggtaagacatgagcctg |
31290573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 29857039 - 29857150
Alignment:
| Q |
132 |
caaaatcaacaaaagtttgtctacaatccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctcttggtagc |
231 |
Q |
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|||||||||||||| ||||| || ||||||| ||||||||| |||| ||||||||| || ||| |||| |||||| | ||||| | |||||| || | |
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| T |
29857039 |
caaaatcaacaaaatcttgtcaactatccaaactggtaaccatttcatcatcataactgccaatccaaatgttgatttcccaaaaacttctctaggcaaa |
29857138 |
T |
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| Q |
232 |
acatgaacctgt |
243 |
Q |
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|||||||||||| |
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| T |
29857139 |
acatgaacctgt |
29857150 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 17408416 - 17408332
Alignment:
| Q |
157 |
atccaaagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctcttggtagcacatgaacct |
241 |
Q |
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||||||| |||||||| |||| || |||||| |||| ||| |||||||| |||| |||||||| || |||| ||||||||||| |
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| T |
17408416 |
atccaaattggtaaccttttcatcaacataacagctacctcataagttgattttccgaatatttccctcggtaacacatgaacct |
17408332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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