View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1972_low_12 (Length: 208)
Name: NF1972_low_12
Description: NF1972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1972_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 132; Significance: 9e-69; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 132; E-Value: 9e-69
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 19592816 - 19592654
Alignment:
| Q |
18 |
atttattgcaccatcatattcgtcgcagcagccaccacgaccaccatatcaatttagtcgaccatcattttcgtcgcaaccaccacaacaagcacactat |
117 |
Q |
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| T |
19592816 |
atttattgcaccatcatattcgtcgcagcagccaccacgaccaccatatcattttagtcgaccatcatttttgtcgcaaccaccaca---------ctat |
19592726 |
T |
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| Q |
118 |
tcttttcaacgatcttcttcatcgcagccagcacgaccaccatattattctattacaccatattcgtcggaa |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19592725 |
tcttttcaacgatcttcttcatcgcagccagcacgaccaccatattattctattacaccatattcgtcggaa |
19592654 |
T |
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