View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1972_low_4 (Length: 386)
Name: NF1972_low_4
Description: NF1972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1972_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 60 - 371
Target Start/End: Complemental strand, 39839644 - 39839333
Alignment:
| Q |
60 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatg |
159 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39839644 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatg |
39839545 |
T |
|
| Q |
160 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839544 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
39839445 |
T |
|
| Q |
260 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39839444 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
39839345 |
T |
|
| Q |
360 |
actcaacttcat |
371 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39839344 |
actcaacttcat |
39839333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 60 - 371
Target Start/End: Original strand, 39733314 - 39733625
Alignment:
| Q |
60 |
cacaaaagttaaaaaagaattactatgaagcactgacacagataccagacacataaaaggaacctaccgagctacgaacaaccatggaaggtaaagcatg |
159 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
39733314 |
cacaaaagttaaaaaagaattactatgaagcactgacacatataccagacacataaaaggaacttaccgagctacgaacaaccatggaaggtaaagcatg |
39733413 |
T |
|
| Q |
160 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39733414 |
atgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttccttcaaaatttttccctgacttgtaatcacaa |
39733513 |
T |
|
| Q |
260 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39733514 |
gcataaacaacttcacctttgaattcagaaagtccttcaatttcaggagtaacacactcagcattttcgccggtagcaacaacaagccacctacaaatat |
39733613 |
T |
|
| Q |
360 |
actcaacttcat |
371 |
Q |
| |
|
|||||||||||| |
|
|
| T |
39733614 |
actcaacttcat |
39733625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 333 - 365
Target Start/End: Complemental strand, 31290504 - 31290472
Alignment:
| Q |
333 |
tagcaacaacaagccacctacaaatatactcaa |
365 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| |
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|
| T |
31290504 |
tagcaacaacaagccacctacaaatattctcaa |
31290472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 124 - 371
Target Start/End: Original strand, 29857435 - 29857685
Alignment:
| Q |
124 |
taccgagctacgaacaaccatggaaggtaaagcatgatgattgctaagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttc |
223 |
Q |
| |
|
|||||||||||||| ||| || |||||| | |||| |||||||| ||||||||| || ||||||||||||||||| ||||| |||||||| | ||||||| |
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|
| T |
29857435 |
taccgagctacgaagaacaatagaaggtgatgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttc |
29857534 |
T |
|
| Q |
224 |
tttccttcaaaatttttccctgacttgtaatcacaagcataaacaacttcacctttgaattcagaa---agtccttcaatttcaggagtaacacactcag |
320 |
Q |
| |
|
|| ||| |||| ||| ||||| || ||||||||||||| || || |||||| ||||||||| | | |||||||| | ||| ||||||||| | |
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|
| T |
29857535 |
ttccctctaaaactttcacctgatttataatcacaagcatgaataatttcacccttgaattcaccacctaacccttcaatataaggcacaacacactctg |
29857634 |
T |
|
| Q |
321 |
cattttcgccggtagcaacaacaagccacctacaaatatactcaacttcat |
371 |
Q |
| |
|
|||| || || |||||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
29857635 |
cattctcaccagtagcaaccacaagcgacctacaaatatactcaacttcat |
29857685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 323 - 370
Target Start/End: Complemental strand, 17408021 - 17407974
Alignment:
| Q |
323 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
370 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
17408021 |
ttttcaccggtagcaaccacaagccacctacaaatatactcaacttca |
17407974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 228
Target Start/End: Complemental strand, 17408175 - 17408116
Alignment:
| Q |
169 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
228 |
Q |
| |
|
||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
17408175 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
17408116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 108
Target Start/End: Original strand, 19040190 - 19040219
Alignment:
| Q |
79 |
ttactatgaagcactgacacagataccaga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
19040190 |
ttactatgaagcactgacacagataccaga |
19040219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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