View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1972_low_6 (Length: 372)

Name: NF1972_low_6
Description: NF1972
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1972_low_6
NF1972_low_6
[»] chr2 (14 HSPs)
chr2 (16-163)||(32182342-32182489)
chr2 (17-164)||(32157589-32157736)
chr2 (15-154)||(32118569-32118708)
chr2 (15-164)||(2821212-2821361)
chr2 (15-164)||(32212091-32212240)
chr2 (15-164)||(32156479-32156628)
chr2 (16-150)||(32152420-32152554)
chr2 (16-164)||(32207017-32207165)
chr2 (228-338)||(32118384-32118494)
chr2 (18-164)||(32174255-32174401)
chr2 (16-164)||(32110295-32110443)
chr2 (65-164)||(32147650-32147749)
chr2 (71-164)||(32153413-32153506)
chr2 (95-164)||(32534236-32534305)


Alignment Details
Target: chr2 (Bit Score: 132; Significance: 2e-68; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 16 - 163
Target Start/End: Complemental strand, 32182489 - 32182342
Alignment:
Q  16 ttaactacctttgcattactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaagttactccagctgaaattggagaagagctaac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  32182489 ttaactacctttgcattactgaacatgaactctttgaaaagattgaagtgcttctaggagaagttcaagttactccggctgaaattggagaagagctaac 32182390  T
Q  116 aaaggattgtgatgctacagaatgcctacaagaccttatcaaattcct 163  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32182389 aaaggattgtgatgctacagaatgcctacaagaccttatcaaattcct 32182342  T

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Target: chr2; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 17 - 164
Target Start/End: Complemental strand, 32157736 - 32157589
Alignment:
Q  17 taactacctttgcattactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaagttactccagctgaaattggagaagagctaaca 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||| |||||||||||||||||||| |||    
T  32157736 taactacctttgcattactgaacatgaactctttgaaaagattgaagtgcttctaggagaagttcaagttactcctgctgaaattggagaagagctcaca 32157637  T
Q  117 aaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32157636 aaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc 32157589  T

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Target: chr2; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 15 - 154
Target Start/End: Complemental strand, 32118708 - 32118569
Alignment:
Q  15 attaactacctttgcattactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaagttactccagctgaaattggagaagagctaa 114  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  32118708 attaactacctctgcattactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaagttactccagctgaaattgctgaagagctaa 32118609  T
Q  115 caaaggattgtgatgctacagaatgcctacaagaccttat 154  Q
    | ||||||||||||||||||||||||||||||||||||||    
T  32118608 cgaaggattgtgatgctacagaatgcctacaagaccttat 32118569  T

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Target: chr2; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 2821212 - 2821361
Alignment:
Q  15 attaactacctttgcattactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaagttactccagctgaaattggagaagagctaa 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||| ||||||||||||||||||||||||||| |||||||||||    
T  2821212 attaactacctttgcattactcaacatgaactctttgaaaagattgaagttcttctaggagaagttcaagttactccagctgaaattgcagaagagctaa 2821311  T
Q  115 caaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc 164  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  2821312 caaaggattgtgatgctacaaaatgcctacaagaccttatcaaattcctc 2821361  T

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Target: chr2; HSP #5
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 15 - 164
Target Start/End: Original strand, 32212091 - 32212240
Alignment:
Q  15 attaactacctttgcattactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaagttactccagctgaaattggagaagagctaa 114  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||| |||||||||||    
T  32212091 attaactacctttgcattactcaacatgaactctttgaaaagattgaactgcttctaggagaagttcaagttactcctgctgaaattgcagaagagctaa 32212190  T
Q  115 caaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc 164  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| ||||    
T  32212191 caaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctc 32212240  T

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Target: chr2; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 164
Target Start/End: Complemental strand, 32156628 - 32156479
Alignment:
Q  15 attaactacctttgcattactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaagttactccagctgaaattggagaagagctaa 114  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||  |||||||||| |||||||||||||||| |||||||||| ||||||||| |    
T  32156628 attaactacctttgcattactgaacatgaactctttgataagattgaagtgcttctaggagaagttcaagttactcctgctgaaattgcagaagagctta 32156529  T
Q  115 caaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc 164  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  32156528 caaaggatgttgatgctacagaatgcctacaagaccttatcaaattcctc 32156479  T

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Target: chr2; HSP #7
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 32152554 - 32152420
Alignment:
Q  16 ttaactacctttgcattactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaagttactccagctgaaattggagaagagctaac 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   ||| ||||| |||||||||||||||| |||||||||| ||||||||||||    
T  32152554 ttaactacctttgcattactgaacatgaactctttgaaaagattgaagttcttttaggagaagttcaagttactcctgctgaaattgcagaagagctaac 32152455  T
Q  116 aaaggattgtgatgctacagaatgcctacaagacc 150  Q
    |||||||||||||||||||||||||||||||||||    
T  32152454 aaaggattgtgatgctacagaatgcctacaagacc 32152420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 32207017 - 32207165
Alignment:
Q  16 ttaactacctttgcattactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaagttactccagctgaaattggagaagagctaac 115  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||  |||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  32207017 ttaactacctttgcattactcaacatgaactctttgaagagattgaagtgcttctaggagaagttcaagttactccagctgaaattgcagaagagctaac 32207116  T
Q  116 aaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc 164  Q
    |||||| |||||||| |||||||| ||| ||||||||||||||| ||||    
T  32207117 aaaggactgtgatgcaacagaatgtctagaagaccttatcaaatccctc 32207165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 228 - 338
Target Start/End: Complemental strand, 32118494 - 32118384
Alignment:
Q  228 ctagatagagaaaatatataggtcatgtttggctccctataaactgtaagctattctaagtagatactttgttctatagttttatatgtatcttgaaact 327  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  32118494 ctagatagagaaaatatataggtcatgtttggctccctataaactgtaagctattctaagtagatactttgttctatagttttatatgtatcttgagact 32118395  T
Q  328 tgacattatat 338  Q
    | |||||||||    
T  32118394 tcacattatat 32118384  T

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Target: chr2; HSP #10
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 32174401 - 32174255
Alignment:
Q  18 aactacctttgcattactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaagttactccagctgaaattggagaagagctaacaa 117  Q
    |||||||| ||| ||||| |||||||||||||||| |||||||||  |||||||||| ||||||||||||||||||||||||||| |||||||||||| |    
T  32174401 aactacctctgcgttactcaacatgaactctttgataagattgaagtgcttctaggagaagttcaagttactccagctgaaattgcagaagagctaacca 32174302  T
Q  118 aggattgtgatgctacagaatgcctacaagaccttatcaaattcctc 164  Q
    ||||||||||||||||||||||||||||||||||||| | |||||||    
T  32174301 aggattgtgatgctacagaatgcctacaagaccttataatattcctc 32174255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 16 - 164
Target Start/End: Complemental strand, 32110443 - 32110295
Alignment:
Q  16 ttaactacctttgcattactgaacatgaactctttgaaaagattgaacagcttctaggacaagttcaagttactccagctgaaattggagaagagctaac 115  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||   ||| ||||| ||||||||||||||||||||||||||| ||||| | ||||    
T  32110443 ttaactacctttgtattactgaacatgaactctttgaaaagattgaagttcttttaggagaagttcaagttactccagctgaaattgcagaagtgttaac 32110344  T
Q  116 aaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc 164  Q
    |||||||  |||||||||||||||| |||||||||||||||||||||||    
T  32110343 aaaggatgttgatgctacagaatgcttacaagaccttatcaaattcctc 32110295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 65 - 164
Target Start/End: Complemental strand, 32147749 - 32147650
Alignment:
Q  65 gcttctaggacaagttcaagttactccagctgaaattggagaagagctaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc 164  Q
    |||| ||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32147749 gcttttaggagaagttcaagttactccagctgaaattgcagaagagttaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc 32147650  T

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Target: chr2; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 71 - 164
Target Start/End: Complemental strand, 32153506 - 32153413
Alignment:
Q  71 aggacaagttcaagttactccagctgaaattggagaagagctaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc 164  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||   ||||||| |||||||||||||| |||||||||||||||||    
T  32153506 aggacaagttcaagttactccagctgaaattgtagaagagctaacaaaggaggttgatgctgcagaatgcctacaataccttatcaaattcctc 32153413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 32534305 - 32534236
Alignment:
Q  95 tgaaattggagaagagctaacaaaggattgtgatgctacagaatgcctacaagaccttatcaaattcctc 164  Q
    |||||||| |||| ||||||||||||||  ||||||||||||||||||||||||||||||||||| ||||    
T  32534305 tgaaattgtagaatagctaacaaaggatgttgatgctacagaatgcctacaagaccttatcaaatccctc 32534236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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