View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19730_high_1 (Length: 436)
Name: NF19730_high_1
Description: NF19730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19730_high_1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 14 - 436
Target Start/End: Complemental strand, 52926221 - 52925801
Alignment:
| Q |
14 |
ctgttgctgctgaaaccaacccacaggatgctcccgttccaccctgcatttccactcttgaaggtggtcttgatcagcatttactctggtgattgaggat |
113 |
Q |
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| T |
52926221 |
ctgttgctgctgaaaccaacccacaggatgctcccgttccaccctgcatttccactcttgaaggtggtcttgttcaac--ttgctattgaagttgaagat |
52926124 |
T |
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| Q |
114 |
cgtgctcaccgctccgcaatcaccagagtaaatgctgatgatgttcgtgtcactgtagctgctcctgctgctcgtggagaagctaacaatgaacttttgg |
213 |
Q |
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| T |
52926123 |
cgtgctcaccgctccgcaatcaccagagtaaatgctgatgatgttcgtgtcactgtagctgctcctgctgctcgtggagaagctaacaatgaacttttgg |
52926024 |
T |
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| Q |
214 |
agtttatgggaaaggttttaggtttaagattgagtcaaatgactcttcagagaggatggaataacaagtcaaagcttcttgtggtcagtcatgtcttctt |
313 |
Q |
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| T |
52926023 |
agtttatgggaaaggttttaggtttaagattgagtcaaatgactcttcagagaggatggaataacaagtcaaagcttcttgtggtcagtcatgtcttctt |
52925924 |
T |
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| Q |
314 |
caacttaaccaagtagtaagtatttctcaacaaacatatatactaacgctaattttcaccatcatttcaggtggaggatctcactgctagacaagtttat |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52925923 |
caacttaaccaagtagtaagtatttctcaacaaacatatatactaatgctaattttcaccatcatttcaggtggaggatctcactgctagacaagtttat |
52925824 |
T |
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| Q |
414 |
gagaaacttttggaggctgtgca |
436 |
Q |
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| T |
52925823 |
gagaaacttttggaggctgtgca |
52925801 |
T |
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