View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19730_low_1 (Length: 577)
Name: NF19730_low_1
Description: NF19730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19730_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 23 - 416
Target Start/End: Original strand, 27694223 - 27694625
Alignment:
| Q |
23 |
cacagagatcaatattaaaatggcagcgaaaatgggtagtaccccgtacatcatagccattttgattttttggggttggttgggggatctgctcgactca |
122 |
Q |
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| T |
27694223 |
cacagagatcaatattaaaatggcagcgaaaatgggtagtaccccgtacatcatagccattttgattttttggggttggttgggggatctgctcgactca |
27694322 |
T |
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| Q |
123 |
gtcagtcagtcatggctagctacctggactaattatctcacttggtgctgacttcaagtcaacca-------------ataatgcctcatcactcatttt |
209 |
Q |
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| T |
27694323 |
gtcagtcagtcatggcta----cctggactaattatctcacttggtgctgacttcaagtcaaccacatgaaccgcccaataatgcctcatcactcatttt |
27694418 |
T |
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| Q |
210 |
ttatccttttaaacccgcctgggcccacggtttggggacaaaagatttttagagtttggacaagaattaagaaataagtatctagtaactccgtaatccg |
309 |
Q |
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| T |
27694419 |
ttatccttttaaacccgcctgggcccacggtttagggacaaaagatttttagagtttggacaagaattaagaaataagtatctagtaactccgtaatccg |
27694518 |
T |
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| Q |
310 |
tattaatcacgtatctatttaaaacaaaaacattaaatgtatctagtaattagcgatgacacttatataatatttagtgatctaatttgttacaaaaaga |
409 |
Q |
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| T |
27694519 |
tattaatcacgtatatatttaaaacaaaaacattaaatgtatctagtaattagcgatgacacttatataatatttagtgatctaatttgttacaaaaaga |
27694618 |
T |
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| Q |
410 |
agtgtga |
416 |
Q |
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| T |
27694619 |
agtgtga |
27694625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 447 - 562
Target Start/End: Original strand, 27694633 - 27694748
Alignment:
| Q |
447 |
gcacaaggtcaataagtcatattggtttgttagatggacatggtgattgatcagcattcgaaatggctatttggttaaaaactctcatccatgtgttctt |
546 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27694633 |
gcactaggtcaataagtcatattggtttgttagatggacatggtgattgatcagcattcgaaatggctatttggttaaaaactctcatccatgtgttctt |
27694732 |
T |
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| Q |
547 |
gttctgctttttaatt |
562 |
Q |
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| T |
27694733 |
gttctgctttttaatt |
27694748 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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