View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19731_low_1 (Length: 612)
Name: NF19731_low_1
Description: NF19731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19731_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 15 - 529
Target Start/End: Complemental strand, 3855580 - 3855066
Alignment:
| Q |
15 |
cttcgttggcttcaccctgtagtcaatgggtttgttgatcatgtcgatctcacttttttgcagcactcttccactacccccatttgcttgccacatggca |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || |
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| T |
3855580 |
cttcgttggcttcaccctgtagtcaatgggtttgttgatcatgtcgatctcacttttttgcagcactcttccactacccccatttgcttcccaggtccca |
3855481 |
T |
|
| Q |
115 |
ttctaacttattcacctcttgttgttttgaacttgaatgggaatggggtcttaactatacaccatgttcataaacgttttactcatttgcccgaactcaa |
214 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||| | |||||||||||||| |||| || |
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| T |
3855480 |
ttctaacttattcacctcttgttgttttgaacttgaatgggaatggggtcttaatgatataccatgttgataaatatcttactcatttgcccaaacttaa |
3855381 |
T |
|
| Q |
215 |
aaaactccacatgacaaaggttcgttttcgaaagcttaaatatcttattaagattctctctgtatgtccacttctcgaggatttactcataaaaaatgtc |
314 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3855380 |
aaaactccacatgacaaaggttcgttttcgaaagcttaaatatcttattaagattctctctgtatgtccatttctcgaggatttactcataaaaaatgtc |
3855281 |
T |
|
| Q |
315 |
agcacccatgatgataatgatactcttgatgctcttgctaaacaaacagacgagttattagaacccttccccaatttgctcaaatcccacatttctgact |
414 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3855280 |
agcacccatgatgataatgatactcttgatgctcttgctaaacaaacagacgagttattagaacccttccccaatttgctcaaatcccacatttctgact |
3855181 |
T |
|
| Q |
415 |
cttcttctatttcttannnnnnncccttgaaattgttttacaatgtggagtttctacgcgcgcaagttgtggtacaaacacccttgaaattgtttgacta |
514 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| | ||||| || |||||||||||||||| |||| |
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| T |
3855180 |
cttcttctatttcttatttttttcccttgaaattgttttacaatgtggagtttctacgcgcacaagtagcggtacgaaaacccttgaaattgtttaacta |
3855081 |
T |
|
| Q |
515 |
tgtcgcgccggtaca |
529 |
Q |
| |
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||||||||| ||||| |
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| T |
3855080 |
tgtcgcgccagtaca |
3855066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 553 - 595
Target Start/End: Complemental strand, 3855060 - 3855018
Alignment:
| Q |
553 |
ctcagtttttcaatttaactcatatggagcttagctttgagaa |
595 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3855060 |
ctcagtttttcaatttaactcatgtggagcttagctttgagaa |
3855018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 54 - 596
Target Start/End: Original strand, 4141082 - 4141624
Alignment:
| Q |
54 |
catgtcgatctcacttttttgcagca---ctcttccactacccccatttgcttgccacatggcattctaacttattcacctcttgttgttttgaacttga |
150 |
Q |
| |
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||||| ||| |||||||||||||||| ||||||| ||||||| |||| ||||||| || |||||| || |||| ||||||||||||||||||||| |
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| T |
4141082 |
catgttgatttcacttttttgcagcagcactcttccgctaccccgatttacttgccaaataacattct---ttgttcaactcttgttgttttgaacttga |
4141178 |
T |
|
| Q |
151 |
atgggaatggggtcttaactatacaccatgttcataaacgttttactcatttgcccgaactcaaaaaactccacatgacaaaggttcgttttcgaaagct |
250 |
Q |
| |
|
||||||||||||| ||||| ||| || |||| || || || |||| || ||||| | ||| |||||||||||||||||||||||| ||||| |||||| |
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| T |
4141179 |
atgggaatggggtgttaacaatagactgtgtttatgaatcttatactaatctgcccaacctcgaaaaactccacatgacaaaggttcattttctaaagct |
4141278 |
T |
|
| Q |
251 |
taaatatcttattaagattctctctgtatgtccacttctcgaggatttactcataaaaaatgtcagcacccatgatgataatgatactcttgatgctctt |
350 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||| |||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
4141279 |
taaatatcttattcagattctctctgtatgtccacttcttgaggatttgctcataaaaaatgtcaccaccaatgatgataatgatactcttgatgctctt |
4141378 |
T |
|
| Q |
351 |
gctaaacaaacagacgagttattagaacccttccccaatttgctcaaatcccacatttctgactcttcttctatttcttannnnnnncccttgaaattgt |
450 |
Q |
| |
|
||||||||| |||| |||| ||| ||||||||||||| ||||||||| |||||||||| ||||||||||||||||| | ||||||||||||| |
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|
| T |
4141379 |
actaaacaaagagacaagttgttaaaacccttccccaaattgctcaaagcccacatttccgactcttcttctatttcgtcttttttgcccttgaaattgt |
4141478 |
T |
|
| Q |
451 |
tttacaatgtggagtttctacgcgcgcaagttgtggtacaaacacccttgaaattgtttgactatgtcgcgccggtacaaacacctgaacaacaagacac |
550 |
Q |
| |
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||||||||||||||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||||| |
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| T |
4141479 |
tttacaatgtggagtttctacgcgcacaagtcgcggtacaaacacccttgaaattgtttgactatgtcgcaccagtacaaacatctgaacaacaagacac |
4141578 |
T |
|
| Q |
551 |
tgctcagtttttcaatttaactcatatggagcttagctttgagaag |
596 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4141579 |
tactcagtttttcaatttaactcatatggagcttagctttgagaag |
4141624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 150 - 313
Target Start/End: Original strand, 1881932 - 1882095
Alignment:
| Q |
150 |
aatgggaatggggtcttaactatacaccatgttcataaacgttttactcatttgcccgaactcaaaaaactccacatgacaaaggttcgttttcgaaagc |
249 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||| | ||||| |||||||| | ||||||||||||||| | |||| ||||| ||||| ||||| |
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| T |
1881932 |
aatgggaatggggtcttaactattgacaatgttcataactctcttactaatttgcccaacctcaaaaaactccacttcacaagggttcattttctaaagc |
1882031 |
T |
|
| Q |
250 |
ttaaatatcttattaagattctctctgtatgtccacttctcgaggatttactcataaaaaatgt |
313 |
Q |
| |
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|| ||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
1882032 |
ttcaatttcttattaagattctctctgtatgtccgcttcttgaggatttactcatcaaaaatgt |
1882095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 585
Target Start/End: Original strand, 1882185 - 1882232
Alignment:
| Q |
538 |
aacaacaagacactgctcagtttttcaatttaactcatatggagctta |
585 |
Q |
| |
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|||| ||||||||| |||| ||| |||||||||||||||||||||||| |
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| T |
1882185 |
aacatcaagacactactcaatttctcaatttaactcatatggagctta |
1882232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 1881510 - 1881567
Alignment:
| Q |
48 |
gttgatcatgtcgatctcacttttttgcagcactcttccactacccccatttgcttgc |
105 |
Q |
| |
|
||||| |||||| ||||||||||| || |||| ||| ||||||||||||||| ||||| |
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|
| T |
1881510 |
gttgaacatgtcaatctcacttttctgtagcattctcccactacccccatttacttgc |
1881567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 1e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 41541770 - 41541889
Alignment:
| Q |
194 |
tactcatttgcccgaactcaaaaaactccacatgacaaaggttcgttttcgaaagcttaaatatcttattaagattctctctgtatgtccacttctcgag |
293 |
Q |
| |
|
|||| |||||||| | ||||||||||||||| | |||| ||||| ||||| ||||||| ||| |||||||||||||||||| |||||||| ||||| ||| |
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|
| T |
41541770 |
tactaatttgcccaacctcaaaaaactccacttcacaagggttcattttccaaagcttcaatttcttattaagattctctccgtatgtccgcttcttgag |
41541869 |
T |
|
| Q |
294 |
gatttactcataaaaaatgt |
313 |
Q |
| |
|
||||||||||| |||||||| |
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|
| T |
41541870 |
gatttactcatcaaaaatgt |
41541889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 376 - 421
Target Start/End: Original strand, 41541946 - 41541991
Alignment:
| Q |
376 |
aacccttccccaatttgctcaaatcccacatttctgactcttcttc |
421 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||| |
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|
| T |
41541946 |
aacccttccccaatttgctcaaagcccacatttctgactcttcttc |
41541991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 538 - 585
Target Start/End: Original strand, 41542054 - 41542101
Alignment:
| Q |
538 |
aacaacaagacactgctcagtttttcaatttaactcatatggagctta |
585 |
Q |
| |
|
|||| ||||||||| |||| ||| |||||||||||||||||||||||| |
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|
| T |
41542054 |
aacatcaagacactactcaatttctcaatttaactcatatggagctta |
41542101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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