View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19731_low_4 (Length: 230)
Name: NF19731_low_4
Description: NF19731
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19731_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 30836648 - 30836884
Alignment:
| Q |
1 |
ctaaatgccaacataatcttatttcattttcacaatggcattctactttt-aatcattataatagccaggttttgtaattgatatgcatccattaaatag |
99 |
Q |
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| T |
30836648 |
ctaaatgcctccataatcttatttcattttcacaatggtattctactttttaatcatcataatagccaggttttgtagttgatatgcatccattaaatag |
30836747 |
T |
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| Q |
100 |
tgtagcatatgtaaactatgtaacagaggatctgggaatgcgtataaaa---------------------atttcaatattaaggtgtgaataaggaaaa |
178 |
Q |
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| T |
30836748 |
tgtagcatatgtaaactatgtaacggaagatctgggaatgcatataaaaatgcaagattaaaagtttgtcatttcaatattaaggtgtgaataaggaaaa |
30836847 |
T |
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| Q |
179 |
tcatttcctacaattccatacacagtcactttatatt |
215 |
Q |
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| T |
30836848 |
tcatttcctacaattccatacacaatcgctttatatt |
30836884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 30817579 - 30817814
Alignment:
| Q |
1 |
ctaaatgccaacataatcttatttcattttcacaatggcattctactttt-aatcattataatagccaggttttgtaattgatatgcatccattaaatag |
99 |
Q |
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||||||||| ||| |||||||||||| || |||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
30817579 |
ctaaatgcctccatgatcttatttcatgtttgcaatggcattctactttttaatcattataatagccaggttttgcagttgatatgcatccattaaatag |
30817678 |
T |
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| Q |
100 |
tgtagcatatgtaaactatgtaacagaggatctgggaatgcgtataaaa---------------------atttcaatattaaggtgtgaataaggaaaa |
178 |
Q |
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| T |
30817679 |
tgtagcatatgtaaactatataacagaggatttgggaatacgtataaaaatgcaagattaaaagtttgtcatttcaatattaaggtgtgaataaggaaaa |
30817778 |
T |
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| Q |
179 |
tcatttcctacaattccatacacagtcactttatat |
214 |
Q |
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| T |
30817779 |
tcatttcctacaattccatacacaatcacttgatat |
30817814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 118 - 214
Target Start/End: Complemental strand, 23549588 - 23549492
Alignment:
| Q |
118 |
tgtaacagaggatctgggaatgcgtataaaaatttcaatattaaggtgtgaataaggaaaatcatttcctacaattccatacacagtcactttatat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||| |
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| T |
23549588 |
tgtaacagaggatctgggaatgcgtataaaaatttcaatattaaggtgtgaataaggaaaatcatttcctacaattccgtacagaatcactttatat |
23549492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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