View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19732_low_1 (Length: 558)
Name: NF19732_low_1
Description: NF19732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19732_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 19 - 557
Target Start/End: Complemental strand, 14561599 - 14561071
Alignment:
| Q |
19 |
acacggttctaggaatgtgtcctcactttgatagcaaatttgattgccaaagttgtgtct-gacattgatatcatcgccctttgatcatgtggatcattt |
117 |
Q |
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| T |
14561599 |
acacggttctaggaatttgtcctcactttgatagcaaatttgattgccaaagttgtgtctagatattgatatcatcgccctttgatcatgtggaacattt |
14561500 |
T |
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| Q |
118 |
aggactcaacattgactgctaaagttgtgtctgatgatgaatttgagagaaatttggaagagtaaattgtggagtgttgttgaggtatttgaaatgccta |
217 |
Q |
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| T |
14561499 |
aggactcaacattgactgctaaagttgtgtctgatgatgaatttgagagaaaattggaagagtaaattgtggagtgttgttgaggtatttgaaatgccta |
14561400 |
T |
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| Q |
218 |
atggattgtggttgagaaatgctctcaacatggttaccgggcaatcta-gacttgtaatcaaatgtagggttaaactttagaatttagagggagaaacta |
316 |
Q |
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| T |
14561399 |
atggattgtggttgagaaatgctctcaacatggttaccgggcaatctatgacttgtaatcaaatgtagggttaaactttagaatttaga-ggagaaacta |
14561301 |
T |
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| Q |
317 |
gagaattc-nnnnnnnnnnttgattattttccattcatattcataatgaggcattgatttttgttgctaccggaactcccacggactctcgaacaccaaa |
415 |
Q |
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| T |
14561300 |
gagaattcaaaaagaaaaattgattatttttcattcatattcataatgaggcattgattgttgttgctaccggaactcccacggactcccgaacaccaaa |
14561201 |
T |
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| Q |
416 |
gtatagtatgagtgtgttggttcaacatgtagttcaacatgacttacaaatatattgaagatgaaatcagtaatcatcaacttaatttcacacaattata |
515 |
Q |
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| T |
14561200 |
gtatagtatgagtgtgttg------------gttcaacataacttacaaatatactgaagatcaaatcagtaatcatcaacttaatttcacacaattata |
14561113 |
T |
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| Q |
516 |
tttcatttttacattaagtcatgaattctgatcatatttcat |
557 |
Q |
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| T |
14561112 |
tttcatttttacattaagtcatgaattctgatcatatttcat |
14561071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 484 - 557
Target Start/End: Complemental strand, 14570853 - 14570775
Alignment:
| Q |
484 |
agtaatcatcaacttaatttcaca-----caattatatttcatttttacattaagtcatgaattctgatcatatttcat |
557 |
Q |
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| T |
14570853 |
agtaatcaacagcttaatttcacaaagtgcaattacatttcatttctgcattaagccctgaattctgatcatatttcat |
14570775 |
T |
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