View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19732_low_2 (Length: 529)
Name: NF19732_low_2
Description: NF19732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19732_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 240 - 523
Target Start/End: Complemental strand, 40399838 - 40399552
Alignment:
| Q |
240 |
taaattgcaagaaaaaggtgtgtgagaaaggaatgaaaagaaagactactcaaatggattcatagtggaattttgtcacgctatatcatgtgtgatgatg |
339 |
Q |
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| T |
40399838 |
taaattgcaagaaaaaggtgtgtgagaaaggaatgaaaagaaagactactcaaatggattcatagtggaattttgtcacgctatatcatgtgtgatgatg |
40399739 |
T |
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| Q |
340 |
at---ttgcaatgactatgttttttctatttggttgttagttgaagagttttttgttgttatggtatgttacacatattaaaatgtgattttagggagcc |
436 |
Q |
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| T |
40399738 |
atgatttgcaatgactatgttttttctatttggttgttagttgaagagttttttgttgttatggtatgttacacatattaaaatgtgattttagggagcc |
40399639 |
T |
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| Q |
437 |
atgaggtgccaaaaacaagagccaaatgggagaatcatgttttcaannnnnnnnatcctttgcttgcctttctgttcttgatgatgt |
523 |
Q |
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| T |
40399638 |
atgaggtgccaaaaacaagagccaaatgggagaatcatgttttcaattttttttatcctttgcttgcctttctgttcttgatgatgt |
40399552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 40400093 - 40399861
Alignment:
| Q |
19 |
tccaccacccttggatgttgttgcaaaccattttctctgccggaactcactgacctcacaaacgcagcgtctgattccggccacttgtagaggttcacat |
118 |
Q |
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| T |
40400093 |
tccaccacccttggatgttgttgcaaaccattttctctgccggaactcactgacctcacaaacgcagcgtctgattccggccacttgtagaggttcacat |
40399994 |
T |
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| Q |
119 |
agctggctctcactgggactcgtgggtctcgtgcgtcgttgatacaatttgatatacaggaagagttcatcatatttttccctcttagtttcctacttta |
218 |
Q |
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| T |
40399993 |
agctggctctcactgggactcgtgggtctcgtgcgtcgttgatacaatttgatatacaagaagagttcatcatatttttccctcttagtttcctacttta |
40399894 |
T |
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| Q |
219 |
ggcaatcttcagagagggatataaattgcaaga |
251 |
Q |
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| T |
40399893 |
ggcaatcttcaaagagggatataaattgcaaga |
40399861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 176
Target Start/End: Complemental strand, 29016402 - 29016290
Alignment:
| Q |
64 |
ctcactgacctcacaaacgcagcgtctgattccggccacttgtagaggttcacatagctggctctcactgggactcgtgggtctcgtgcgtcgttgatac |
163 |
Q |
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||||| || ||||||||| |||| |||||||| ||||||||||||||||| || |||||| ||||| || ||||| || ||||| ||||| | || |
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| T |
29016402 |
ctcaccgatctcacaaactcagcatctgattctggccacttgtagaggtttgtgtatgtggctcgaactggcacgcgtggatcacgtgcatcgttcacac |
29016303 |
T |
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| Q |
164 |
aatttgatataca |
176 |
Q |
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||||||||||||| |
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| T |
29016302 |
aatttgatataca |
29016290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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