View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19732_low_3 (Length: 455)
Name: NF19732_low_3
Description: NF19732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19732_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 23786896 - 23786572
Alignment:
| Q |
1 |
taactacgatggtccaaaggataaccctttttaagtatgatgtcattataaaacaacattgctttgtctatctgacttctaagacaaaaaccttctaaga |
100 |
Q |
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| T |
23786896 |
taactacgatggtccaaaggataaccctttttaagtatgatgtcattataaaacggcattgctttgtctatctgacttctaagacaaaaaccttctaaga |
23786797 |
T |
|
| Q |
101 |
gagcatttaaagtttcagcagtaggataatgaccggagtcgatggttttattgaattaatagagagctgaagacatgttacctcttagagagtgacactg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23786796 |
gagcatttaaagtttcagcagtaggataatgaccggagtcgatgattttattgaataaatagagagctgaagacatgttacctcttagagagtgacactg |
23786697 |
T |
|
| Q |
201 |
gatgaggataatgaaagtatgagtgtctggatctggacgtacaggaccatcaaatttggataattcatcatttaattctttgac-aggttaaaaatagtg |
299 |
Q |
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| T |
23786696 |
gatgaggataatgaaagtatgagtgtctggatctggacgtacaggaccatcgaatttggataattcatcatctaattctttgacaaggataaaaatagtg |
23786597 |
T |
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| Q |
300 |
tcgaaagagtgcattttagcaagtt |
324 |
Q |
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| T |
23786596 |
tcgaaagagtgcattttagcaagtt |
23786572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 325 - 455
Target Start/End: Complemental strand, 23786540 - 23786410
Alignment:
| Q |
325 |
acaaacacccatggaaagcatgtttttgaagaatttaacagcttcatcgtgaggattgccatagtcattagaaaaagcgacacgcggtctagccatggga |
424 |
Q |
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| T |
23786540 |
acaaacacccatggaaagcatgtttttgaagaatttaacagcttcatcgtgaggattgccatagtcattagaaaaagcgatacgcggtctagccatggga |
23786441 |
T |
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| Q |
425 |
gttggatataatactgagaaggatgacgaaa |
455 |
Q |
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| T |
23786440 |
gttggatataatactgagaaggatgacgaaa |
23786410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 47568987 - 47568800
Alignment:
| Q |
23 |
aaccctttttaagtatgatgtcattataaaacaacattgctttgtctatctgacttctaagacaaaaaccttctaagagagcatttaaagtttcagcagt |
122 |
Q |
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|||| |||||||||||||||||||| ||||||| |||||||||||| |||| | ||| |||||||||| |||| ||| ||| ||||||| | ||| |
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| T |
47568987 |
aaccgtttttaagtatgatgtcattgtaaaacagcattgctttgtcagtctgtcgtctgcgacaaaaaccaactaaaagatgattcaaagtttgtgtagt |
47568888 |
T |
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| Q |
123 |
aggataatgaccggagtcgatggttttattgaattaatagagagctgaagacatgttacctcttagagagtgacactggatgaggata |
210 |
Q |
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| T |
47568887 |
aggattatcaccggtgtcgatgattttatggaataaagagatatctgaagacattttaccttgtctagagtgacactggatgaggata |
47568800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 182
Target Start/End: Complemental strand, 28238926 - 28238753
Alignment:
| Q |
9 |
atggtccaaaggataaccctttttaagtatgatgtcattataaaacaacattgctttgtctatctgacttctaagacaaaaaccttctaagagagcattt |
108 |
Q |
| |
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||||||||| || ||||||||||||||||||||| ||| ||||| |||||| |||| |||||| |||| ||||||||| | ||| |||| || |
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| T |
28238926 |
atggtccaactgaaaaccctttttaagtatgatgtaattgtaaaagtgcattgccttgtgaatctgatgtctatcacaaaaaccatataaaagagaatac |
28238827 |
T |
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| Q |
109 |
aaagtttcagcagtaggataatgaccggagtcgatggttttattgaattaatagagagctgaagacatgttacc |
182 |
Q |
| |
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||||| |||||||||||| |||||||| ||||||| | |||| ||| | ||| |||||||||||||||||| |
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| T |
28238826 |
aaagtaccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttacc |
28238753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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