View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19732_low_4 (Length: 392)

Name: NF19732_low_4
Description: NF19732
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19732_low_4
NF19732_low_4
[»] scaffold0076 (1 HSPs)
scaffold0076 (27-376)||(6727-7062)
[»] chr6 (11 HSPs)
chr6 (83-238)||(4845902-4846057)
chr6 (219-343)||(19697845-19697970)
chr6 (195-373)||(3835629-3835808)
chr6 (194-373)||(24044903-24045072)
chr6 (191-323)||(14579582-14579716)
chr6 (262-342)||(6591850-6591930)
chr6 (202-268)||(19973657-19973723)
chr6 (197-267)||(19976070-19976140)
chr6 (4-59)||(4846052-4846107)
chr6 (229-326)||(2936165-2936262)
chr6 (283-336)||(15518074-15518127)
[»] chr1 (13 HSPs)
chr1 (4-197)||(9111649-9111840)
chr1 (238-373)||(9111511-9111646)
chr1 (219-342)||(12141653-12141777)
chr1 (246-372)||(24981133-24981259)
chr1 (225-341)||(43254114-43254230)
chr1 (219-318)||(1953680-1953780)
chr1 (219-326)||(38825494-38825602)
chr1 (202-342)||(4242570-4242708)
chr1 (246-342)||(47580415-47580513)
chr1 (219-341)||(38828689-38828812)
chr1 (250-373)||(49387576-49387699)
chr1 (191-257)||(21501345-21501411)
chr1 (219-342)||(51465487-51465601)
[»] chr4 (11 HSPs)
chr4 (169-373)||(895387-895590)
chr4 (229-342)||(6667720-6667834)
chr4 (221-342)||(13010534-13010655)
chr4 (225-341)||(31767450-31767566)
chr4 (226-342)||(44643452-44643568)
chr4 (229-342)||(6671392-6671500)
chr4 (1-56)||(895312-895367)
chr4 (229-341)||(13250527-13250640)
chr4 (297-342)||(20058104-20058149)
chr4 (229-341)||(43287851-43287964)
chr4 (209-371)||(4747173-4747332)
[»] scaffold0028 (2 HSPs)
scaffold0028 (226-348)||(127700-127822)
scaffold0028 (226-341)||(110121-110236)
[»] chr8 (11 HSPs)
chr8 (219-342)||(1788900-1789024)
chr8 (79-226)||(41739941-41740090)
chr8 (246-372)||(17028375-17028501)
chr8 (246-372)||(17558811-17558937)
chr8 (246-342)||(39655700-39655796)
chr8 (246-342)||(21185322-21185418)
chr8 (307-376)||(17088737-17088806)
chr8 (219-342)||(38678679-38678800)
chr8 (219-296)||(38676300-38676378)
chr8 (305-342)||(38676893-38676930)
chr8 (2-45)||(41740144-41740187)
[»] chr5 (5 HSPs)
chr5 (219-377)||(18594807-18594966)
chr5 (247-376)||(39292120-39292249)
chr5 (213-309)||(13291940-13292037)
chr5 (248-342)||(26703018-26703113)
chr5 (248-342)||(26972751-26972846)
[»] chr2 (10 HSPs)
chr2 (219-342)||(2590493-2590617)
chr2 (226-348)||(21189401-21189524)
chr2 (229-341)||(18739113-18739226)
chr2 (202-289)||(27107279-27107367)
chr2 (229-325)||(1043148-1043244)
chr2 (219-372)||(14433570-14433725)
chr2 (219-342)||(35969278-35969398)
chr2 (204-260)||(8424424-8424480)
chr2 (250-309)||(27083123-27083183)
chr2 (186-257)||(27083189-27083263)
[»] chr7 (11 HSPs)
chr7 (219-342)||(11673994-11674117)
chr7 (195-373)||(13815707-13815885)
chr7 (226-342)||(31210076-31210193)
chr7 (226-342)||(15569566-15569682)
chr7 (226-342)||(31206627-31206744)
chr7 (219-342)||(39426452-39426576)
chr7 (210-371)||(2609574-2609735)
chr7 (270-372)||(22301122-22301224)
chr7 (219-342)||(3850540-3850665)
chr7 (221-340)||(32352432-32352551)
chr7 (201-309)||(15169910-15170019)
[»] chr3 (9 HSPs)
chr3 (211-376)||(2353181-2353346)
chr3 (198-376)||(26445061-26445239)
chr3 (192-326)||(9372229-9372365)
chr3 (225-371)||(19930008-19930153)
chr3 (206-322)||(14658109-14658225)
chr3 (167-264)||(16366445-16366537)
chr3 (195-281)||(14654840-14654929)
chr3 (4-70)||(16366541-16366608)
chr3 (269-371)||(42253534-42253635)
[»] scaffold0014 (1 HSPs)
scaffold0014 (246-342)||(82642-82738)
[»] scaffold0002 (1 HSPs)
scaffold0002 (197-309)||(448692-448802)
[»] scaffold0216 (1 HSPs)
scaffold0216 (203-302)||(12090-12190)
[»] scaffold0293 (1 HSPs)
scaffold0293 (246-326)||(4942-5022)


Alignment Details
Target: scaffold0076 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 27 - 376
Target Start/End: Complemental strand, 7062 - 6727
Alignment:
Q  27 ataacatagtgctttttacgatggacaataccagaagcacgctttttaccagaagcataccaaaatatatactttctttttagcaatttggggagacact 126  Q
    |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7062 ataagatagtgctttttacgatggacaataccagaagcacgctttt-accagaagcataccaaaatatatactttctttttagcaatttggagagacact 6964  T
Q  127 tcttgatcagaaaaataccacttttccaccaacacgaaagctctttctttctttccaatttttcttcctgggttacatctcctgtgtttatcaaatttaa 226  Q
    ||||||||||||||||||||||||||||||||||  ||| ||||||             |||||||| ||||||||||||||||||||||||||||| ||    
T  6963 tcttgatcagaaaaataccacttttccaccaacataaaaactcttt-------------ttttcttcgtgggttacatctcctgtgtttatcaaattcaa 6877  T
Q  227 gttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtga 326  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||| ||  ||||||||| | | |||||| |||||||||||||| ||||||||    
T  6876 gttgttctgtcatctctgatatgattcatatcagggaaaaactgttgtatcatggaaggatatgcacttatgaggcggataaaatcctcaatgacagtga 6777  T
Q  327 gtatgtcacgcctcagtttagagaatggtttattgttttgcaggttacat 376  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6776 ctatgtcacgcctcagtttagataatggtttattgttttgcaggttacat 6727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 140; Significance: 3e-73; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 83 - 238
Target Start/End: Complemental strand, 4846057 - 4845902
Alignment:
Q  83 ataccaaaatatatactttctttttagcaatttggggagacacttcttgatcagaaaaataccacttttccaccaacacgaaagctctttctttctttcc 182  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  4846057 ataccaaaatatatactttctttttagcaatttggggagacacttcttgatcagaaaaataccacttttccaccaacacaaaagctctttctttcttccc 4845958  T
Q  183 aatttttcttcctgggttacatctcctgtgtttatcaaatttaagttgttctgtca 238  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  4845957 aatttttcttcctgggttacatctcccgtgtttatcaaattcaagttgttctgtca 4845902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 219 - 343
Target Start/End: Complemental strand, 19697970 - 19697845
Alignment:
Q  219 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    |||||| ||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  19697970 aaatttgagttgttctgtcacctccgattatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaa 19697871  T
Q  318 ggacagtgagtatgtcacgcctcagt 343  Q
    ||||| ||| ||||||||||||||||    
T  19697870 ggacaatgactatgtcacgcctcagt 19697845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 195 - 373
Target Start/End: Complemental strand, 3835808 - 3835629
Alignment:
Q  195 tgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgc 293  Q
    |||||| |||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||  |||||||||||||||||||||||||    
T  3835808 tgggttgcatctcttgtgtttatcaaattcaagttgttctgtcacctctgatatgatttatatcagagaagaatttgttgtatcctgagaggatatgcgc 3835709  T
Q  294 ctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctca-gtttagagaatggtttattgttttgcaggtta 373  Q
     | |||||  ||  ||||||| |||||| ||||   | |||| ||||| |||||   ||||||||| ||||||||||||||    
T  3835708 ttatgagg-tgaataaatccttaaggacggtgatcttatcacacctcatgtttatgcaatggtttactgttttgcaggtta 3835629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 194 - 373
Target Start/End: Complemental strand, 24045072 - 24044903
Alignment:
Q  194 ctgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcg 292  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||| |          |||||||||| |||||||||||| |||||||||||    
T  24045072 ctgggttgcatctcctgtgtttatcatatttaagttgttctgtcacctctgatgt----------agggaagaacatgttgtatcctgggaggatatgcg 24044983  T
Q  293 cctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggtta 373  Q
    | | |||||| ||  ||||||| ||||||||||| | ||||||||||||  ||| | ||||| ||| ||||| ||||||||    
T  24044982 cttatgaggc-gaataaatccttaaggacagtgactttgtcacgcctcatgttatataatggattactgtttggcaggtta 24044903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 191 - 323
Target Start/End: Original strand, 14579582 - 14579716
Alignment:
Q  191 ttcctgggttacatc--tcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggat 287  Q
    |||||||||| ||||  |||| || |||||||||| ||||||||||||||||||| | ||||||||| |||| |||||| ||||||||||||||||||||    
T  14579582 ttcctgggtttcatcattcctctgattatcaaattcaagttgttctgtcacctcttacatgattcatgtcagagaagaacctgttgtatcctgagaggat 14579681  T
Q  288 atgcgcctttgaggcagataaaatcctcaaggacag 323  Q
    || ||| | |||||| ||| ||||||| ||||||||    
T  14579682 attcgcttatgaggcggat-aaatccttaaggacag 14579716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 262 - 342
Target Start/End: Complemental strand, 6591930 - 6591850
Alignment:
Q  262 gaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 342  Q
    |||||||||||| |||||| |||||||||||| | |||||| ||||||||||||||||||||||| || ||||||||||||    
T  6591930 gaagaactgttgcatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactacgtcacgcctcag 6591850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 202 - 268
Target Start/End: Original strand, 19973657 - 19973723
Alignment:
Q  202 catctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac 268  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||| |||||||    
T  19973657 catctcctgtgtttatcaaattcgagttgttctgtcacctctgatttgattcatatcagagaagaac 19973723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 19976070 - 19976140
Alignment:
Q  197 ggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa 267  Q
    |||| ||||||||||| ||||||||||  |||||||||||||||| | |||||||||||||||| ||||||    
T  19976070 ggtttcatctcctgtggttatcaaattcgagttgttctgtcacctttaatatgattcatatcagagaagaa 19976140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 4846107 - 4846052
Alignment:
Q  4 atatcttgggagtatatatgataataacatagtgctttttacgatggacaatacca 59  Q
    ||||||| ||||||||||||||||||| ||||| |||||||| |||||||||||||    
T  4846107 atatcttcggagtatatatgataataagatagtactttttacaatggacaatacca 4846052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 326
Target Start/End: Complemental strand, 2936262 - 2936165
Alignment:
Q  229 tgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtga 326  Q
    |||||||||||||||||| ||||| ||||||| ||||||| ||| ||||| ||| | ||||||||| | |||||| ||| ||||||| |||||||||||    
T  2936262 tgttctgtcacctctgatgtgatttatatcagagaagaacatgtggtatcttgaaaagatatgcgcttatgaggcggat-aaatccttaaggacagtga 2936165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 336
Target Start/End: Original strand, 15518074 - 15518127
Alignment:
Q  283 aggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacg 336  Q
    ||||||||||| | |||||| |||| |||||||||||| ||||| |||||||||    
T  15518074 aggatatgcgcttatgaggcggatataatcctcaaggaaagtgactatgtcacg 15518127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 2e-65; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 9111840 - 9111649
Alignment:
Q  4 atatcttgggagtatatatgataataacatagtgctttttacgatggacaataccagaagcacgctttttaccagaagcata-ccaaaatatatactttc 102  Q
    |||| |||| ||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||    
T  9111840 atatgttggaagtatatatgataataacacagtgctttttacgatggacaatagctgaagcacgctttttaccagaagcatacccaaaatatatactttc 9111741  T
Q  103 tttttagcaatttggggagacacttcttgatcagaaaaataccacttttccaccaacacgaaagctctttctttctttccaatttttcttcctgg 197  Q
    ||||||| ||||| |||| ||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||    
T  9111740 tttttag-aattt-gggaaacacttcttgatcag-aaaataccacttttccaccaacacaaaaactctttctttcttcccaatttttcttcctgg 9111649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 238 - 373
Target Start/End: Complemental strand, 9111646 - 9111511
Alignment:
Q  238 acctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgc 337  Q
    ||||||||||||||| ||||||| ||||||||||||||||||| || ||||||||| | |||||| ||||||||||||||||||||||| ||||||||||    
T  9111646 acctctgatatgatttatatcagtgaagaactgttgtatcctgggaagatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgc 9111547  T
Q  338 ctcagtttagagaatggtttattgttttgcaggtta 373  Q
    ||||| ||| | ||  ||||| | ||||||||||||    
T  9111546 ctcagattatataacagtttactattttgcaggtta 9111511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 342
Target Start/End: Complemental strand, 12141777 - 12141653
Alignment:
Q  219 aaatttaagttgttctgtcacctct-gatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    |||||| |||||||||||||||||| | ||||||||||| | ||||| || |||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  12141777 aaatttgagttgttctgtcacctctagttatgattcataacggggaataattgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaa 12141678  T
Q  318 ggacagtgagtatgtcacgcctcag 342  Q
    ||||||||| |||||||||||||||    
T  12141677 ggacagtgactatgtcacgcctcag 12141653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 246 - 372
Target Start/End: Complemental strand, 24981259 - 24981133
Alignment:
Q  246 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagttt 345  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||| || | |||||| ||||||||||||||||||  ||| ||||||||||||||| ||    
T  24981259 tatgattcataacggggaagaactgttgtatcctgggaggatatgtgcttatgaggcggataaaatcctcaaggacgctgactatgtcacgcctcaggtt 24981160  T
Q  346 agagaatggtttattgttttgcaggtt 372  Q
    | | ||| || | ||||||||||||||    
T  24981159 acataatagtattttgttttgcaggtt 24981133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 225 - 341
Target Start/End: Original strand, 43254114 - 43254230
Alignment:
Q  225 aagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacag 323  Q
    |||||||||||||||||||||||||||||||||  ||||||||| |||||||||||| |||||||||||| | |||||| ||  ||||||| ||||||||    
T  43254114 aagttgttctgtcacctctgatatgattcatatatgggaagaacatgttgtatcctgggaggatatgcgcttatgaggc-gaataaatccttaaggacag 43254212  T
Q  324 tgagtatgtcacgcctca 341  Q
    ||| | ||||||||||||    
T  43254213 tgactttgtcacgcctca 43254230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 219 - 318
Target Start/End: Original strand, 1953680 - 1953780
Alignment:
Q  219 aaatttaagttgttctgtcacctct-gatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    |||||| |||||||||||||||||  | ||||||||||| ||||||||||||||||||||||| |||||||| ||| | |||||||||||||||||||||    
T  1953680 aaatttgagttgttctgtcacctcccgttatgattcataacagggaagaactgttgtatcctgggaggatattcgcttatgaggcagataaaatcctcaa 1953779  T
Q  318 g 318  Q
    |    
T  1953780 g 1953780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 219 - 326
Target Start/End: Complemental strand, 38825602 - 38825494
Alignment:
Q  219 aaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    ||||| ||||||||||| ||||| |||||||||||||| ||| ||||||| |||||||||||| |||||||||||  | |||||  ||||||||||| ||    
T  38825602 aaattcaagttgttctgccacctttgatatgattcatagcagagaagaacttgttgtatcctgggaggatatgcgtttatgaggaggataaaatccttaa 38825503  T
Q  318 ggacagtga 326  Q
    |||||||||    
T  38825502 ggacagtga 38825494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 342
Target Start/End: Complemental strand, 4242708 - 4242570
Alignment:
Q  202 catctcctgtgtttatcaaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgag 300  Q
    ||||||||||||||||   |||  ||||||||||||||||  ||| |||||||||| | ||||||||| ||||||||||| ||||||||||||   ||||    
T  4242708 catctcctgtgtttat---attcgagttgttctgtcaccttcgattatgattcataacggggaagaacagttgtatcctgggaggatatgcgctcatgag 4242612  T
Q  301 gcagataaaatcctcaaggacagtgagtatgtcacgcctcag 342  Q
     | |||||||||||||||||||  || ||||||||| |||||    
T  4242611 tcggataaaatcctcaaggacaacgattatgtcacgtctcag 4242570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 246 - 342
Target Start/End: Original strand, 47580415 - 47580513
Alignment:
Q  246 tatgattcatatcagggaagaactgttgtatcctga--gaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 342  Q
    ||||||||||| | ||||||| |||||||||||||   |||||||| ||| | |||||||||||||||| ||||||||| ||| |||||||||||||||    
T  47580415 tatgattcataacggggaagacctgttgtatcctggtggaggatattcgcttatgaggcagataaaatcttcaaggacattgactatgtcacgcctcag 47580513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 219 - 341
Target Start/End: Complemental strand, 38828812 - 38828689
Alignment:
Q  219 aaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    ||||| ||||||||||| || |||||||||||||||||  |||||||||| |||| ||||||| || |||||| || | | |||| ||||||||||| ||    
T  38828812 aaattcaagttgttctgccaactctgatatgattcatagtagggaagaacttgttttatcctgggaagatatgagcttataaggcggataaaatccttaa 38828713  T
Q  318 ggacagtgagtatgtcacgcctca 341  Q
    ||| ||||| |  |||||||||||    
T  38828712 ggatagtgacttcgtcacgcctca 38828689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 373
Target Start/End: Complemental strand, 49387699 - 49387576
Alignment:
Q  250 attcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttaga 348  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||| | | ||||  ||||| |||| |||| |||||| | ||||||||||||  ||| |    
T  49387699 attcacatcagggaagaacatgttgtatcctgggaggatatgcgcttataaggcgaataaa-tccttaaggccagtgactttgtcacgcctcatgttata 49387601  T
Q  349 gaatggtttattgttttgcaggtta 373  Q
     ||||| ||| ||||| ||||||||    
T  49387600 taatggattactgtttggcaggtta 49387576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 21501411 - 21501345
Alignment:
Q  191 ttcctgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatat 257  Q
    ||||||||||| ||||| ||||||||  ||||| |||||||||| ||| ||||||||||||| ||||    
T  21501411 ttcctgggttatatctcttgtgtttagaaaattcaagttgttctatcatctctgatatgattgatat 21501345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 51465487 - 51465601
Alignment:
Q  219 aaatttaagttgttctgtcacctctga-tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    |||||| ||||||||||| ||||| || ||||||||||| | || ||||||||||||||||||  || ||||||||          |||||||||  |||    
T  51465487 aaatttgagttgttctgtaacctccgagtatgattcataacgggaaagaactgttgtatcctggaagaatatgcgc----------gataaaatctccaa 51465576  T
Q  318 ggacagtgagtatgtcacgcctcag 342  Q
    ||||||||| |||||||||||||||    
T  51465577 ggacagtgactatgtcacgcctcag 51465601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 169 - 373
Target Start/End: Original strand, 895387 - 895590
Alignment:
Q  169 ctttctttctttccaatttttcttcctgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac 268  Q
    ||||||||||| ||||||||||||||| | |||| |||||||||||||| ||||| || ||||||| |||||||||||||||||||||| ||||||||||    
T  895387 ctttctttcttcccaatttttcttcctag-ttacttctcctgtgtttattaaattcaacttgttctatcacctctgatatgattcatattagggaagaac 895485  T
Q  269 tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgca 368  Q
    | |||||||||| |||||||||||| | |||||| ||||||||||||||||||||||| ||||||||| ||||| ||||| ||  ||||| | |||||||    
T  895486 ttttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgactcaggttagataacagtttactattttgca 895585  T
Q  369 ggtta 373  Q
    |||||    
T  895586 ggtta 895590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 229 - 342
Target Start/End: Complemental strand, 6667834 - 6667720
Alignment:
Q  229 tgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgag 327  Q
    |||||||||||||| | | |||||||||| | ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||| |||||||     
T  6667834 tgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaagaacagtgac 6667735  T
Q  328 tatgtcacgcctcag 342  Q
    |||||||||||||||    
T  6667734 tatgtcacgcctcag 6667720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 221 - 342
Target Start/End: Complemental strand, 13010655 - 13010534
Alignment:
Q  221 atttaagttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaagga 320  Q
    |||| |||||||||||||| || | |||||||| || | | ||||||||||| ||||||  |||||||||||| | |||||| |||||||||||||||||    
T  13010655 atttgagttgttctgtcacatccgttatgattcgtaacggagaagaactgttatatcctaggaggatatgcgcttatgaggcggataaaatcctcaagga 13010556  T
Q  321 cagtgagtatgtcacgcctcag 342  Q
    |||||| |||||||||||||||    
T  13010555 cagtgactatgtcacgcctcag 13010534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 225 - 341
Target Start/End: Complemental strand, 31767566 - 31767450
Alignment:
Q  225 aagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacag 323  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||||| || | |||||| ||| ||||||| ||||| ||    
T  31767566 aagttgttctgtcacctctgatgtgattcatatcagggaagaacatgttgtatcctaggaggatatgtgcttatgaggcggat-aaatccttaaggatag 31767468  T
Q  324 tgagtatgtcacgcctca 341  Q
    ||| | ||||||||||||    
T  31767467 tgattttgtcacgcctca 31767450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 226 - 342
Target Start/End: Original strand, 44643452 - 44643568
Alignment:
Q  226 agttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 324  Q
    ||||||||||||| ||||| | |||||||||||| ||||||||||||||||||||  |||||||||||| | |||||| |||| ||| || |||||||||    
T  44643452 agttgttctgtcatctctggttatgattcatatcggggaagaactgttgtatcctaggaggatatgcgcttatgaggcggatagaat-ctgaaggacagt 44643550  T
Q  325 gagtatgtcacgcctcag 342  Q
    || |||||||||||||||    
T  44643551 gactatgtcacgcctcag 44643568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 342
Target Start/End: Complemental strand, 6671500 - 6671392
Alignment:
Q  229 tgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgag 327  Q
    |||||||||||||| | | |||||||||| | ||||||||||||||||||||| ||||||||||      ||||| |||||||||||||||||| ||||     
T  6671500 tgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgc------gaggcggataaaatcctcaaggacggtgac 6671407  T
Q  328 tatgtcacgcctcag 342  Q
    |||||||||||||||    
T  6671406 tatgtcacgcctcag 6671392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 895312 - 895367
Alignment:
Q  1 aatatatcttgggagtatatatgataataacatagtgctttttacgatggacaata 56  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  895312 aatatatcttgggagtatatatgataataacatagtgttttttactatggacaata 895367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 229 - 341
Target Start/End: Complemental strand, 13250640 - 13250527
Alignment:
Q  229 tgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgag-aggatatgcgcctttgaggcagataaaatcctcaaggacagtga 326  Q
    |||||||||||| ||||| ||||||||||||||||||||| | ||||||||| || ||||||||||| | |||||  ||| ||||| | ||||| |||||    
T  13250640 tgttctgtcaccactgatgtgattcatatcagggaagaacatattgtatcctaagaaggatatgcgcttatgaggtggat-aaatctttaaggagagtga 13250542  T
Q  327 gtatgtcacgcctca 341  Q
     | ||||||||||||    
T  13250541 ctttgtcacgcctca 13250527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 20058149 - 20058104
Alignment:
Q  297 tgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 342  Q
    |||||| ||||||||||||||||||||||| |||||||||||||||    
T  20058149 tgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 20058104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 341
Target Start/End: Original strand, 43287851 - 43287964
Alignment:
Q  229 tgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgag 327  Q
    |||||||||||||||||| ||||||||||| | ||||||  ||||||||||||  | ||||||||| | ||||||  |||||  | | |||||||||||     
T  43287851 tgttctgtcacctctgatgtgattcatatctgagaagaatatgttgtatcctggaaagatatgcgcttatgaggcgaataaatcctttaaggacagtgac 43287950  T
Q  328 tatgtcacgcctca 341  Q
    | ||||||||||||    
T  43287951 tttgtcacgcctca 43287964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 209 - 371
Target Start/End: Original strand, 4747173 - 4747332
Alignment:
Q  209 tgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagata 307  Q
    ||||||||| | ||| |||||||||||||||  |||||||||||||||  || |||||| |||||||||| || |||||||| ||| | |||||   ||     
T  4747173 tgtgtttatgagattcaagttgttctgtcac--ctgatatgattcatacaagcgaagaacctgttgtatcttgggaggatatacgcttatgaggtccat- 4747269  T
Q  308 aaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggt 371  Q
     |||||| || |||||||| |  |||||||||||| |||   ||||||||| ||||||||||||    
T  4747270 gaatccttaa-gacagtgacttcgtcacgcctcagattatttaatggtttactgttttgcaggt 4747332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 226 - 348
Target Start/End: Original strand, 127700 - 127822
Alignment:
Q  226 agttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtg 325  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| || |||||||||||  | |||||| ||||||||||||||||||||||    
T  127700 agttgttctgtcacctctgacatgattcatatcagggaagaactgttgtatcatgggaggatatgcgtttctgaggcggataaaatcctcaaggacagtg 127799  T
Q  326 agtatgtcacgcctcagtttaga 348  Q
    | ||||||||||||||| |||||    
T  127800 actatgtcacgcctcaggttaga 127822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 226 - 341
Target Start/End: Original strand, 110121 - 110236
Alignment:
Q  226 agttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtg 325  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||| || |||||||||||  | |||||| ||||||||||||||||||||||    
T  110121 agttgttctgtcacctctgacatgattcatatcagcgaagaactgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtg 110220  T
Q  326 agtatgtcacgcctca 341  Q
    | ||||||||||||||    
T  110221 actatgtcacgcctca 110236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 219 - 342
Target Start/End: Complemental strand, 1789024 - 1788900
Alignment:
Q  219 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    |||||| ||||||||||||||||| | | |||||||||| | ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  1789024 aaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaa 1788925  T
Q  318 ggacagtgagtatgtcacgcctcag 342  Q
    ||||||||| |||||||||||||||    
T  1788924 ggacagtgactatgtcacgcctcag 1788900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 79 - 226
Target Start/End: Complemental strand, 41740090 - 41739941
Alignment:
Q  79 aagcataccaaaa-tatatactttctttt-tagcaatttggggagacacttcttgatcagaaaaataccacttttccaccaacacgaaagctctttcttt 176  Q
    ||||||||||||| |||||||||||| |  ||||||||||| | |||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||    
T  41740090 aagcataccaaaaatatatactttctctcatagcaatttggagtgacacttcctgatcagaaaaataccacttttccaccaacacaaaaactctttcttt 41739991  T
Q  177 ctttccaatttttcttcctgggttacatctcctgtgtttatcaaatttaa 226  Q
    |||  ||||||||||||||  ||||||| |    ||||||||||||||||    
T  41739990 cttctcaatttttcttcctatgttacattttacatgtttatcaaatttaa 41739941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 246 - 372
Target Start/End: Original strand, 17028375 - 17028501
Alignment:
Q  246 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagttt 345  Q
    ||||||||||| | ||||||||||||  ||||||| ||||||||||||   |||||| ||||||||||||||||||||||| | ||||||||||||| ||    
T  17028375 tatgattcataacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtt 17028474  T
Q  346 agagaatggtttattgttttgcaggtt 372  Q
    | | ||| || | ||||||||||||||    
T  17028475 acataatagtattttgttttgcaggtt 17028501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 246 - 372
Target Start/End: Original strand, 17558811 - 17558937
Alignment:
Q  246 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagttt 345  Q
    ||||||||||| | ||||||||||||  ||||||| ||||||||||||   |||||| ||||||||||||||||||||||| | ||||||||||||| ||    
T  17558811 tatgattcataacggggaagaactgtcatatcctgggaggatatgcgctaatgaggcggataaaatcctcaaggacagtgactgtgtcacgcctcaggtt 17558910  T
Q  346 agagaatggtttattgttttgcaggtt 372  Q
    | | ||| || | ||||||||||||||    
T  17558911 acataatagtattttgttttgcaggtt 17558937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 342
Target Start/End: Complemental strand, 39655796 - 39655700
Alignment:
Q  246 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 342  Q
    ||||||||||| | | |||||||||||||||| || |||||||||| | | |||||| ||||||||||||||||||||||| |||||||||||||||    
T  39655796 tatgattcataacggagaagaactgttgtatcatgggaggatatgcacttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcag 39655700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 246 - 342
Target Start/End: Complemental strand, 21185418 - 21185322
Alignment:
Q  246 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 342  Q
    ||||||||||| | |||||||||| || ||| ||| |||||||||||| | |||||| ||||||||||||||||||||||| |||||||||| ||||    
T  21185418 tatgattcataacggggaagaactattatatgctgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcttcag 21185322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 17088806 - 17088737
Alignment:
Q  307 aaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttacat 376  Q
    |||||||||||||||||||| ||||||||||||||| ||||| ||| ||||||||||||||||| |||||    
T  17088806 aaaatcctcaaggacagtgactatgtcacgcctcaggttagataattgtttattgttttgcaggctacat 17088737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 38678679 - 38678800
Alignment:
Q  219 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    |||||| ||||||||||||||||| ||| |||||||||| | |||||  ||||||||||||||  ||||||||||| | |||| | ||| ||||||||||    
T  38678679 aaatttgagttgttctgtcacctccgattatgattcataacggggaa--actgttgtatcctgtaaggatatgcgcttatgagacggatcaaatcctcaa 38678776  T
Q  318 ggacagtgagtatgtcacgcctcag 342  Q
     |||| ||| |||||||||||||||    
T  38678777 agaca-tgactatgtcacgcctcag 38678800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 296
Target Start/End: Original strand, 38676300 - 38676378
Alignment:
Q  219 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctt 296  Q
    |||||| ||||||||||||||||| ||| |||||||||| | |||||||| |||||||||||| |||||||||| ||||    
T  38676300 aaatttgagttgttctgtcacctccgattatgattcataacggggaagaattgttgtatcctgggaggatatgctcctt 38676378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 305 - 342
Target Start/End: Original strand, 38676893 - 38676930
Alignment:
Q  305 ataaaatcctcaaggacagtgagtatgtcacgcctcag 342  Q
    |||||||||||||||||||||| |||||||||||||||    
T  38676893 ataaaatcctcaaggacagtgactatgtcacgcctcag 38676930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 41740187 - 41740144
Alignment:
Q  2 atatatcttgggagtatatatgataataacatagtgctttttac 45  Q
    |||||| |||||| ||||||||||||||||| ||||||||||||    
T  41740187 atatatgttgggaatatatatgataataacaaagtgctttttac 41740144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 219 - 377
Target Start/End: Original strand, 18594807 - 18594966
Alignment:
Q  219 aaatttaagttgttctgtcacct-ctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    |||||| |||||||||||||||| | | ||||||||||| | ||||||||||||||||||||| ||| |||||||| | |||||| ||||||||| ||||    
T  18594807 aaatttgagttgttctgtcaccttcagttatgattcataacggggaagaactgttgtatcctgtgagaatatgcgcttatgaggcggataaaatcttcaa 18594906  T
Q  318 ggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttacatg 377  Q
    |||||||||  |||||||||||||| ||| | ||| || | |||||||||||||||||||    
T  18594907 ggacagtgacaatgtcacgcctcaggttacataatagtattttgttttgcaggttacatg 18594966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 247 - 376
Target Start/End: Original strand, 39292120 - 39292249
Alignment:
Q  247 atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagttta 346  Q
    |||||||||| | | ||||||||||||||| |||  ||||||||||| | |||||| ||||||||||| ||||||||||| ||| |||| |||||| |||    
T  39292120 atgattcataacggagaagaactgttgtattctggaaggatatgcgcttatgaggcggataaaatccttaaggacagtgactatatcacacctcaggtta 39292219  T
Q  347 gagaatggtttattgttttgcaggttacat 376  Q
    || |||||||||||||||||||||||||||    
T  39292220 gataatggtttattgttttgcaggttacat 39292249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 213 - 309
Target Start/End: Original strand, 13291940 - 13292037
Alignment:
Q  213 tttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaa 309  Q
    |||||||||||  ||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||| |||||||||||| | |||||| ||||||    
T  13291940 tttatcaaattcgagttgttctatcacctctgatatgattcatatcagagaataacctgttgtatcctgggaggatatgcgcttatgaggcggataaa 13292037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 342
Target Start/End: Complemental strand, 26703113 - 26703018
Alignment:
Q  248 tgattcatatcagggaagaact-gttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 342  Q
    ||||||||| ||| |||||||| |||||||| || |||||||||||  | |||||| ||||||||||||||||||||||| || ||||||| ||||    
T  26703113 tgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcag 26703018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 248 - 342
Target Start/End: Complemental strand, 26972846 - 26972751
Alignment:
Q  248 tgattcatatcagggaagaact-gttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 342  Q
    ||||||||| ||| |||||||| |||||||| || |||||||||||  | |||||| ||||||||||||||||||||||| || ||||||| ||||    
T  26972846 tgattcataccagagaagaacttgttgtatcttgggaggatatgcgtttatgaggcggataaaatcctcaaggacagtgactaagtcacgcatcag 26972751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 73; Significance: 3e-33; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 2590493 - 2590617
Alignment:
Q  219 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    |||||| ||||||||||||||||| | | |||||||||| | ||||||||||||||||||||| |||||||||||| | ||||||  |||||||||||||    
T  2590493 aaatttgagttgttctgtcacctccggttatgattcataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcgaataaaatcctcaa 2590592  T
Q  318 ggacagtgagtatgtcacgcctcag 342  Q
    ||||||||| |||||||||||||||    
T  2590593 ggacagtgactatgtcacgcctcag 2590617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 226 - 348
Target Start/End: Original strand, 21189401 - 21189524
Alignment:
Q  226 agttgttctgtcacctct-gatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 324  Q
    |||||||||||||||||  | ||||||||||| | ||||| ||||||||||||| | |||||||||||| | |||||| |||||||||||||||||||||    
T  21189401 agttgttctgtcacctccagttatgattcataacggggaataactgttgtatccggggaggatatgcgcttatgaggcggataaaatcctcaaggacagt 21189500  T
Q  325 gagtatgtcacgcctcagtttaga 348  Q
    || ||||||||||||||| |||||    
T  21189501 gactatgtcacgcctcaggttaga 21189524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 229 - 341
Target Start/End: Complemental strand, 18739226 - 18739113
Alignment:
Q  229 tgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgag 327  Q
    |||||||||||||| ||| |||||||||| | ||||||||| |||||||  || |||||||||||| | |||||| |||||||||||||||||||||||     
T  18739226 tgttctgtcacctccgattatgattcataacggggaagaaccgttgtattgtgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgac 18739127  T
Q  328 tatgtcacgcctca 341  Q
    ||||||||||||||    
T  18739126 tatgtcacgcctca 18739113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 27107279 - 27107367
Alignment:
Q  202 catctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatat 289  Q
    |||||||||||||||||| ||| ||| |||||||||||||||||| ||||| | ||||||||||||| |||||||||||| ||||||||    
T  27107279 catctcctgtgtttatcagattcaagctgttctgtcacctctgatgtgatttacatcagggaagaacatgttgtatcctgggaggatat 27107367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 229 - 325
Target Start/End: Original strand, 1043148 - 1043244
Alignment:
Q  229 tgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtg 325  Q
    |||||||||||| | ||| |||||||||| | ||||||||| ||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||    
T  1043148 tgttctgtcacccccgattatgattcataac-gggaagaacggttgtatcctgggaggatatgcgcctatgagacggataaaatcctcaaggacagtg 1043244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 219 - 372
Target Start/End: Complemental strand, 14433725 - 14433570
Alignment:
Q  219 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctca 316  Q
    |||||| |||| ||||||||||| || | |||||||||| | ||||||||| ||||||||| || || ||| ||  | | |||||| |||||||||| ||    
T  14433725 aaatttgagttattctgtcacctttggttatgattcataacggggaagaacatgttgtatcttgggaagatgtgtacttatgaggcggataaaatccaca 14433626  T
Q  317 aggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggtt 372  Q
    |||||||||| ||||||||||||||| ||| | ||  || ||||||||||||||||    
T  14433625 aggacagtgactatgtcacgcctcaggttacataacagtgtattgttttgcaggtt 14433570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 342
Target Start/End: Complemental strand, 35969398 - 35969278
Alignment:
Q  219 aaatttaagttgttctgtcacctc-tgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    |||||| ||||||||||| ||||| || ||||||||||| | ||||||||||||| || | || ||   ||||||| |||||||| ||||||||| ||||    
T  35969398 aaatttgagttgttctgttacctcctgttatgattcataacggggaagaactgtt-taacatgtga---tatgcgcttttgaggcggataaaatcttcaa 35969303  T
Q  318 ggacagtgagtatgtcacgcctcag 342  Q
    ||||||||| |||||||||||||||    
T  35969302 ggacagtgactatgtcacgcctcag 35969278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 8424424 - 8424480
Alignment:
Q  204 tctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcag 260  Q
    ||||||| ||||||||||||||||||||||||||| ||||  |||||||||||||||    
T  8424424 tctcctgagtttatcaaatttaagttgttctgtcatctctagtatgattcatatcag 8424480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 309
Target Start/End: Complemental strand, 27083183 - 27083123
Alignment:
Q  250 attcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaa 309  Q
    |||||||| |||||||||| |||||||||||| |||||||||||| | |||||| ||||||    
T  27083183 attcatattagggaagaacctgttgtatcctgggaggatatgcgcttgtgaggcggataaa 27083123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 257
Target Start/End: Complemental strand, 27083263 - 27083189
Alignment:
Q  186 ttttcttcctgggttacatctcctgtgtttatcaaatttaagttgttctg---tcacctctgatatgattcatat 257  Q
    |||| ||| ||||||  |||| |||||||||||| ||| ||||||||| |   ||||||||||||||||||||||    
T  27083263 ttttattcttgggttgaatcttctgtgtttatcagattcaagttgttcagcagtcacctctgatatgattcatat 27083189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 7e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 219 - 342
Target Start/End: Original strand, 11673994 - 11674117
Alignment:
Q  219 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    |||||| ||||||||||||||||| ||| |||||||||| | ||||| ||||||||||||||| |||||||||||| | |||||| ||||||||||||||    
T  11673994 aaatttgagttgttctgtcacctccgattatgattcataac-gggaacaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaa 11674092  T
Q  318 ggacagtgagtatgtcacgcctcag 342  Q
    ||||||||| |||||||| ||||||    
T  11674093 ggacagtgactatgtcacacctcag 11674117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 195 - 373
Target Start/End: Original strand, 13815707 - 13815885
Alignment:
Q  195 tgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgc 293  Q
    |||||| |||||| ||||||||||| ||| ||| |||||||||||||||||| ||||||| || |||||||||| |||||||||||| || |||||||||    
T  13815707 tgggttgcatctcttgtgtttatcagattcaagctgttctgtcacctctgatgtgattcacattagggaagaacatgttgtatcctgggaagatatgcgc 13815806  T
Q  294 ctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggtta 373  Q
     | |||||| ||  ||||||| ||||||||||| | ||||||||||||  ||| | ||||| ||| ||||| ||||||||    
T  13815807 ttatgaggc-gaataaatccttaaggacagtgactttgtcacgcctcatgttatataatggattactgtttggcaggtta 13815885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 226 - 342
Target Start/End: Complemental strand, 31210193 - 31210076
Alignment:
Q  226 agttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 324  Q
    ||||||||||||||||| ||| |||||||||| | |||||||||||||||| || | |||||||||| | | |||||| |||||||||||||||||||||    
T  31210193 agttgttctgtcacctccgattatgattcataacggggaagaactgttgtaccccgggaggatatgcacttatgaggcggataaaatcctcaaggacagt 31210094  T
Q  325 gagtatgtcacgcctcag 342  Q
    || |||||||||||||||    
T  31210093 gactatgtcacgcctcag 31210076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 342
Target Start/End: Original strand, 15569566 - 15569682
Alignment:
Q  226 agttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 324  Q
    ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| || | |||||| ||| ||||||  |||||||||    
T  15569566 agttgttctgtcacctctgatatgattcatatcagagaagaacctgttgtatcctgggaggatatgtgcttatgaggcggat-aaatccctaaggacagt 15569664  T
Q  325 gagtatgtcacgcctcag 342  Q
    || | |||||||||||||    
T  15569665 gactttgtcacgcctcag 15569682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 226 - 342
Target Start/End: Complemental strand, 31206744 - 31206627
Alignment:
Q  226 agttgttctgtcacctct-gatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagt 324  Q
    |||||||||||||||||  | ||||||||||| | |||||||||||||||||||||  ||||||||||| | |||||  |||||||||||||| ||||||    
T  31206744 agttgttctgtcacctccagttatgattcataacggggaagaactgttgtatcctgccaggatatgcgcttatgaggtggataaaatcctcaaagacagt 31206645  T
Q  325 gagtatgtcacgcctcag 342  Q
    || |||||||||||||||    
T  31206644 gactatgtcacgcctcag 31206627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 219 - 342
Target Start/End: Complemental strand, 39426576 - 39426452
Alignment:
Q  219 aaatttaagttgttctgtcacctctgat-atgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaa 317  Q
    |||||| ||||||||||||||||| | | |||||||||| ||||||||||||||| |||| || |||||||| ||| | |||| | ||||||||||||||    
T  39426576 aaatttgagttgttctgtcacctccggttatgattcataacagggaagaactgttttatcttgggaggatattcgcttatgagacggataaaatcctcaa 39426477  T
Q  318 ggacagtgagtatgtcacgcctcag 342  Q
    ||||||||| ||| |||||||||||    
T  39426476 ggacagtgactatatcacgcctcag 39426452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 210 - 371
Target Start/End: Complemental strand, 2609735 - 2609574
Alignment:
Q  210 gtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataa 308  Q
    ||||||| ||||||  |||||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||||||||| | |||| ||||| |    
T  2609735 gtgtttaacaaattcgagttgttctgtcacatctgatatgattcatatcagagaagaacatgttgtatcctgcgaggatatgcgcttatgagacagat-a 2609637  T
Q  309 aatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggt 371  Q
    ||| || ||||| ||||| |  |||||||||||| ||| | || || ||| | ||||||||||    
T  2609636 aatacttaaggatagtgacttcgtcacgcctcaggttatataaaggcttactattttgcaggt 2609574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 372
Target Start/End: Complemental strand, 22301224 - 22301122
Alignment:
Q  270 gttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcag 369  Q
    |||||||| || |||||||||||| | |||||| ||||||||||||||||||||||| ||||||||||||||| ||| | ||| || | |||||||||||    
T  22301224 gttgtatcttgggaggatatgcgcttatgaggcggataaaatcctcaaggacagtgactatgtcacgcctcaggttacataatagtattttgttttgcag 22301125  T
Q  370 gtt 372  Q
    |||    
T  22301124 gtt 22301122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 219 - 342
Target Start/End: Complemental strand, 3850665 - 3850540
Alignment:
Q  219 aaatttaagttgttctgtcacctctga-tatgattcatatcagggaagaact-gttgtatcctgagaggatatgcgcctttgaggcagataaaatcctca 316  Q
    |||||| ||||||||| |||||||||  ||||||||||| |  ||||||||| |||||||| |  |||||||||||| | ||||||  |||||||| |||    
T  3850665 aaatttgagttgttctatcacctctgggtatgattcataccgaggaagaactcgttgtatcataggaggatatgcgcttatgaggcgtataaaatcatca 3850566  T
Q  317 aggacagtgagtatgtcacgcctcag 342  Q
    |||||||||| |||||||||||||||    
T  3850565 aggacagtgactatgtcacgcctcag 3850540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 221 - 340
Target Start/End: Complemental strand, 32352551 - 32352432
Alignment:
Q  221 atttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaagg 319  Q
    ||||||| |||||||||||||||||| ||||||||||| | ||||||  |||||| ||||| |||||||||||| | |||||| ||  ||||||| ||||    
T  32352551 atttaagctgttctgtcacctctgatgtgattcatatctgagaagaatatgttgtgtcctgggaggatatgcgcttatgaggc-gaataaatccttaagg 32352453  T
Q  320 acagtgagtatgtcacgcctc 340  Q
    ||||||| | |||||||||||    
T  32352452 acagtgactttgtcacgcctc 32352432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 309
Target Start/End: Original strand, 15169910 - 15170019
Alignment:
Q  201 acatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttga 299  Q
    |||| ||| ||| |||||||||| |||||||||||||| |||||| ||||||||| | || |||||| ||||||||||||| |||||||||||  | |||    
T  15169910 acatttccagtgattatcaaattcaagttgttctgtcatctctgacatgattcatgttagagaagaacctgttgtatcctgtgaggatatgcgtttatga 15170009  T
Q  300 ggcagataaa 309  Q
    ||| ||||||    
T  15170010 ggctgataaa 15170019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 211 - 376
Target Start/End: Original strand, 2353181 - 2353346
Alignment:
Q  211 tgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcagataaa 309  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||| ||||||| || | | |||||| ||| ||    
T  2353181 tgtttatcaaattcaagttgttctgtcacctcttatatgattcatatcagagaagaacctgttgtatcctgggaggataagcacttatgaggcggat-aa 2353279  T
Q  310 atcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttacat 376  Q
    ||||| ||||||| ||| |   ||| ||||||| ||| | || |||||||| |||||||||||||||    
T  2353280 atccttaaggacaatgacttcatcatgcctcaggttatataacggtttattattttgcaggttacat 2353346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 198 - 376
Target Start/End: Complemental strand, 26445239 - 26445061
Alignment:
Q  198 gttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctt 296  Q
    |||| |||||||||||||| |||||| || ||||| |||| |||||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||  |     
T  26445239 gttatatctcctgtgtttagcaaattcaaattgttatgtcgcctctgatatgattcatatcagggaagaacatgttgtatcttgacaggatatacgatta 26445140  T
Q  297 tgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggttacat 376  Q
    |||||| ||| ||||||| ||||||||||| | ||||| ||||||  ||| | |   ||||||| |||||||||||||||    
T  26445139 tgaggcggat-aaatccttaaggacagtgactttgtcatgcctcatgttatatatccgtttattattttgcaggttacat 26445061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 192 - 326
Target Start/End: Complemental strand, 9372365 - 9372229
Alignment:
Q  192 tcctgggttacatc--tcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggata 288  Q
    ||||||||||||||  || |||||||||||||||||||||| | |||||||||| ||||||||||||||||||| ||| ||||||||||||| || ||||    
T  9372365 tcctgggttacatcagtcatgtgtttatcaaatttaagttgctttgtcacctctcatatgattcatatcagggatgaacctgttgtatcctgggacgata 9372266  T
Q  289 tgcgcctttgaggcagataaaatcctcaaggacagtga 326  Q
    ||||| | |||||| ||  ||||||| |||||||||||    
T  9372265 tgcgcttatgaggc-gaataaatccttaaggacagtga 9372229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 225 - 371
Target Start/End: Complemental strand, 19930153 - 19930008
Alignment:
Q  225 aagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacag 323  Q
    |||||||||| ||||||||||| |||||||| |||||||||||| |||||||| ||| |||||||||||| | |||||| ||| ||||||| |||||| |    
T  19930153 aagttgttctatcacctctgatgtgattcatctcagggaagaacatgttgtat-ctgggaggatatgcgcttatgaggcggat-aaatccttaaggacgg 19930056  T
Q  324 tgagtatgtcacgcctcagtttagagaatggtttattgttttgcaggt 371  Q
    ||| | ||||||||||||  ||| | || |||||| | ||||||||||    
T  19930055 tgactttgtcacgcctcatgttatataacggtttactattttgcaggt 19930008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 206 - 322
Target Start/End: Original strand, 14658109 - 14658225
Alignment:
Q  206 tcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctgagaggatatgcgcctttgaggcag 304  Q
    ||||||| ||||||| |||||||||||||||||||||||| ||||||||| | || ||||||  ||||||||||||  ||||||||||| | ||| ||||    
T  14658109 tcctgtgattatcaactttaagttgttctgtcacctctgacatgattcatgttagagaagaatttgttgtatcctggaaggatatgcgcttatgatgcag 14658208  T
Q  305 ataaaatcctcaaggaca 322  Q
    || ||||||| |||||||    
T  14658209 at-aaatccttaaggaca 14658225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 264
Target Start/End: Complemental strand, 16366537 - 16366445
Alignment:
Q  167 ctctttctttctttccaatttttcttcctgggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaa 264  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||||| |||   |||  |||||||||||||||| ||||||||||||||| ||||||    
T  16366537 ctctttctttcttcccaatttttcttcctg--ttacatctcctgtgtatat---attcgagttgttctgtcacctttgatatgattcatattagggaa 16366445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 195 - 281
Target Start/End: Original strand, 14654840 - 14654929
Alignment:
Q  195 tgggttacatct--cctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaa-ctgttgtatcctga 281  Q
    ||||||||||||  |||||| ||||||| || ||||||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||    
T  14654840 tgggttacatctttcctgtgattatcaacttcaagttgttctgtcacctctgacatgattcatgtcagagaagaacctgttgtatcctga 14654929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 70
Target Start/End: Complemental strand, 16366608 - 16366541
Alignment:
Q  4 atatcttgggagtatatatgataataacatagtg-ctttttacgatggacaataccagaagcacgctt 70  Q
    |||||||||||||||||||||||||||| |||||  |||||||||||||||||||   ||||||||||    
T  16366608 atatcttgggagtatatatgataataacgtagtgtttttttacgatggacaatacatcaagcacgctt 16366541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 371
Target Start/End: Complemental strand, 42253635 - 42253534
Alignment:
Q  269 tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcagtttagagaatggtttattgttttgca 368  Q
    |||||||||||  |||||||||||| | |||||| | |||| |||| ||||||||||| | ||||||||||||  ||| | || |||||| | |||||||    
T  42253635 tgttgtatccttggaggatatgcgcttatgaggcgggtaaa-tccttaaggacagtgactttgtcacgcctcatgttatataacggtttactattttgca 42253537  T
Q  369 ggt 371  Q
    |||    
T  42253536 ggt 42253534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 246 - 342
Target Start/End: Original strand, 82642 - 82738
Alignment:
Q  246 tatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtgagtatgtcacgcctcag 342  Q
    ||||||| ||| | ||||||||||||||||||||| |||||||||||| | |||||| ||||||||||||||||| ||||| |||||||||||||||    
T  82642 tatgatttataacggggaagaactgttgtatcctgggaggatatgcgcttatgaggcggataaaatcctcaaggatagtgactatgtcacgcctcag 82738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 309
Target Start/End: Original strand, 448692 - 448802
Alignment:
Q  197 ggttacatctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaactgttgtatcctgagaggatatgcgcctt 296  Q
    |||| |||||||||||||||||| ||| |||||||| |||||||| ||||||||||||||| |||||| |  |||||||||| |||||||||||||  |     
T  448692 ggttgcatctcctgtgtttatcagattcaagttgttttgtcacctttgatatgattcatattagggaaca--tgttgtatcccgagaggatatgcgatta 448789  T
Q  297 tgaggcagataaa 309  Q
    |||||||||||||    
T  448790 tgaggcagataaa 448802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 302
Target Start/End: Original strand, 12090 - 12190
Alignment:
Q  203 atctcctgtgtttatcaaatttaagttgttctgtcacctctgatatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgagg 301  Q
    ||||| ||||||||||| |||  |||||||||||||||||||||||||||||||| |||||||||| |||||||||||  || ||||||||| | |||||    
T  12090 atctcatgtgtttatcagattggagttgttctgtcacctctgatatgattcatataagggaagaacttgttgtatcctaggatgatatgcgcttgtgagg 12189  T
Q  302 c 302  Q
    |    
T  12190 c 12190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 326
Target Start/End: Complemental strand, 5022 - 4942
Alignment:
Q  246 tatgattcatatcagggaagaac-tgttgtatcctgagaggatatgcgcctttgaggcagataaaatcctcaaggacagtga 326  Q
    ||||||||||||||  ||||||| ||||||||| || ||||||||| || | |||||||||| ||||||| ||| |||||||    
T  5022 tatgattcatatcatagaagaacctgttgtatcttgggaggatatgtgcttatgaggcagat-aaatccttaagaacagtga 4942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University