View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19733_low_2 (Length: 343)
Name: NF19733_low_2
Description: NF19733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19733_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 19276268 - 19275951
Alignment:
| Q |
11 |
cagagatggagaagtgagagaagctacaactcttggtgtttgttggaatctaattggccatgaaggaaacatttcaagtgtagctgctggtttgcctgta |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19276268 |
cagagatggagaagtgagagaagctacaactcttggtgtttgttggaatctaattggccatgaaggaaacatttcaagtgtagctgctggtttgcttgta |
19276169 |
T |
|
| Q |
111 |
aataaagcagctgcaagaaaaatcacaagaagaaaaatctcaaaacataataaccaaataaataatagaggactatatgatattttcaattatatatcaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19276168 |
aataaagcagctgcaagaaaaatcacaagaagaaaaatctcagaacataataaccaaataaataatagaggactatatgatattttcaattatatatcaa |
19276069 |
T |
|
| Q |
211 |
tatcataaggtggatgaacctaatccttcttttgaagtcatgcaagggaagttagttttattgcttcatcatcattattctactcaaaatggtaactttt |
310 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19276068 |
tatcataaggtggatgaacctaatcctccttttggagtcatgcaagggaagttagttttattgcttcatcatcattattctactcaaaatggtaactttt |
19275969 |
T |
|
| Q |
311 |
cctactcaacacttttct |
328 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
19275968 |
cctactcaacacttttct |
19275951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University