View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19733_low_3 (Length: 245)
Name: NF19733_low_3
Description: NF19733
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19733_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 41806175 - 41806405
Alignment:
| Q |
1 |
cgggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatctaactttggagagagaa |
100 |
Q |
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| T |
41806175 |
cgggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatctaactttggagagaaaa |
41806274 |
T |
|
| Q |
101 |
aaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41806275 |
aaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgtt |
41806374 |
T |
|
| Q |
201 |
ttatctcttctggttcagaagagagaaacct |
231 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
41806375 |
ttatctcttctggttcagaagagagaaacct |
41806405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 41800053 - 41800270
Alignment:
| Q |
1 |
cgggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatctaactttggagagagaa |
100 |
Q |
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||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||| || |
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| T |
41800053 |
cgggacctataaaatcaaataaccaggagaatctaacaaaatcaaacacaaaccataaactgtgcaggaaaaggaaatgcacatcactttggagaataaa |
41800152 |
T |
|
| Q |
101 |
aaacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatc-tttttcctgacttttctgtgctgcttgt |
199 |
Q |
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|||||| |||||| |||||||||||||| ||||||||||||| || ||||| || || ||||||||| |||||||||| ||||||||||| ||||| |
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| T |
41800153 |
aaacagaagtaag----atatttagaagattcacggcttgtgtttttctacctcgtttgagctcctacatcttttttcctgaattttctgtgcttcttgt |
41800248 |
T |
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| Q |
200 |
tttatc-tcttctggttcagaa |
220 |
Q |
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|||||| |||||| |||||||| |
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| T |
41800249 |
tttatcttcttctagttcagaa |
41800270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 24631864 - 24632035
Alignment:
| Q |
9 |
ataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatctaactttggagagagaaaaacagta |
108 |
Q |
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||||||||||||||| ||| |||||||||||||| || ||| |||||||| | || |||||| ||||| ||| | |||| | ||||| | ||||| || |
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| T |
24631864 |
ataaaatcaaataaccgggataatctcacaaaatcgaaaacagaccataaattgtgttggaaaaagaaatccatatcacttggaagaga-agaaacatta |
24631962 |
T |
|
| Q |
109 |
gtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctga |
181 |
Q |
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|||||||||||||||||||||||| ||||||| | |||| |||||||||||| |||| ||||||||||||| |
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| T |
24631963 |
gtaagtgaaatatttagaagatttgtggcttgtatctgtctacctcattcaagctcctggatctttttcctga |
24632035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 24685259 - 24685444
Alignment:
| Q |
2 |
gggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaatgcatctaactttggagagagaaa |
101 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
24685259 |
gggacctataaaatcaaataaccagaagaatctcacaaaatcaaacacaaaccataaactgtgcaggaaaa------------------agagagagaaa |
24685340 |
T |
|
| Q |
102 |
aacagtagtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttt |
201 |
Q |
| |
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|||||| ||||||| || |||||||||||| |||||| |||||||| |||||| || || ||||| |||||||||||| || ||| |||| || |||| |
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| T |
24685341 |
aacagtggtaagtgcaacatttagaagattcgcggcttttgtttgtctacctcagtcgagctcctaggtctttttcctgaattctctctgcttctggttt |
24685440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 24682519 - 24682594
Alignment:
| Q |
3 |
ggacctataaaatcaaataacaaggagaatctcacaaaatcaaacacaaaccataaactttgcaggaaaaggaaat |
78 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||| |||||||||| ||||| ||||||| ||||||||||| |||| |
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| T |
24682519 |
ggacctataaaatcaaagaaccaggagaatctcataaaatcaaacgcaaacaataaactgtgcaggaaaagtaaat |
24682594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 3 - 131
Target Start/End: Original strand, 24653535 - 24653664
Alignment:
| Q |
3 |
ggacctataaaatcaaataacaaggagaatct--cacaaaatcaaacacaaaccataaactttgcagg--aaaaggaaatgcatctaactttggagagag |
98 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| || ||||||||||||| || ||||||| |||||| ||||| |||||||| | | | |||| | || |
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| T |
24653535 |
ggacctataaaatcaaagaaccaggagaatctcgcataaaatcaaacacacacaataaactgtgcaggaaaaaagtaaatgcatatca-tatggaaaaag |
24653633 |
T |
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| Q |
99 |
aaaaacagtagtaagtgaaatatttagaagatt |
131 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
24653634 |
--aaacagtagtaagtgaaatatttagaagatt |
24653664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 278622 - 278541
Alignment:
| Q |
2 |
gggacctataaaatcaaataacaaggagaatctcacaaaatc-aaacacaaaccataaactttgcaggaaaaggaaatgcat |
82 |
Q |
| |
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||||||||||| ||||||| ||||||||||| ||| |||||| ||| |||||||||||| || |||||||||||||||| |
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| T |
278622 |
gggacctataatatcaaatgacaaggagaatttcagaaaatcaaaatccaaaccataaaccgtggtggaaaaggaaatgcat |
278541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 220
Target Start/End: Complemental strand, 278511 - 278393
Alignment:
| Q |
104 |
cagtagtaagtgaaatatttagaagatttacgg--cttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttt |
201 |
Q |
| |
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|||||||||| || | |||||||||||| | || ||| ||||||| | ||||||| || ||||| ||||||||||||| ||||||||||| | |||| |
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| T |
278511 |
cagtagtaagggagacatttagaagattcatgggccttctgtttgtta-cctcatttgagctcctagatctttttcctgaattttctgtgcttgtggttt |
278413 |
T |
|
| Q |
202 |
tat-ctcttctggttcagaa |
220 |
Q |
| |
|
||| |||||||||||||||| |
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|
| T |
278412 |
tatcctcttctggttcagaa |
278393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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