View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19734_high_2 (Length: 567)

Name: NF19734_high_2
Description: NF19734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19734_high_2
NF19734_high_2
[»] chr6 (1 HSPs)
chr6 (30-557)||(10116348-10116870)
[»] chr2 (17 HSPs)
chr2 (17-155)||(410184-410322)
chr2 (17-155)||(965463-965601)
chr2 (17-153)||(821078-821214)
chr2 (18-148)||(974016-974146)
chr2 (301-516)||(965079-965300)
chr2 (40-144)||(982089-982193)
chr2 (17-144)||(1403192-1403319)
chr2 (301-517)||(1400007-1400220)
chr2 (301-542)||(821325-821570)
chr2 (17-125)||(1399487-1399595)
chr2 (302-517)||(1403726-1403941)
chr2 (322-517)||(410490-410685)
chr2 (292-439)||(973727-973874)
chr2 (34-135)||(989773-989874)
chr2 (302-435)||(957801-957934)
chr2 (17-137)||(824815-824935)
chr2 (83-136)||(963576-963629)
[»] chr3 (4 HSPs)
chr3 (17-155)||(45810484-45810622)
chr3 (272-517)||(45810121-45810366)
chr3 (81-138)||(49426733-49426790)
chr3 (79-136)||(43359748-43359805)
[»] chr7 (7 HSPs)
chr7 (292-517)||(12105490-12105715)
chr7 (23-155)||(12105209-12105341)
chr7 (24-153)||(1446010-1446139)
chr7 (86-152)||(1459324-1459390)
chr7 (415-514)||(1445672-1445771)
chr7 (17-136)||(28449797-28449916)
chr7 (92-136)||(1333502-1333546)
[»] chr5 (1 HSPs)
chr5 (25-136)||(36199053-36199164)
[»] chr1 (2 HSPs)
chr1 (80-136)||(48675483-48675539)
chr1 (459-514)||(48675098-48675153)


Alignment Details
Target: chr6 (Bit Score: 504; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 30 - 557
Target Start/End: Complemental strand, 10116870 - 10116348
Alignment:
Q  30 attccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcag 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10116870 attccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcag 10116771  T
Q  130 gtttgtttgttaaatttaacaatcattttaagatacaattatgtttcattttattttaacactagtactaatagaatgtatgtaatgtatcattttattt 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||    
T  10116770 gtttgtttgttaaatttaacaatcattttaagatacaattatgtttcattttattttaacactagtactaatagaatgtatgta-----tcattttattt 10116676  T
Q  230 tatctatatttttaacagaagataaatggctataattggttggatcaagaaaactgggttcgtccaaaaaatgttccaggttgtctttcatcaaacctta 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10116675 tatctatatttttaacagaagataaatggctataattggttggatcaagaaaactgggttcgtccaaaaaatgttccaggttgtctttcatcaaacctta 10116576  T
Q  330 caacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgagagttttagaaactat 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10116575 caacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgagagttttagaaactat 10116476  T
Q  430 gtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttcaattaaaaacatatat 529  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10116475 gtcaatctggtgttgcgggaaacggtctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttcaattaaaaacatatat 10116376  T
Q  530 gattatgtaagtagccttagtttctctg 557  Q
    ||||||||||||||||||||||||||||    
T  10116375 gattatgtaagtagccttagtttctctg 10116348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 91; Significance: 8e-44; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 410184 - 410322
Alignment:
Q  17 atgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatct 116  Q
    ||||||| |||||||||||||||||||  ||||||||| ||  ||| ||  ||||||||||||||||||||||||||||||||||||| |||||||||||    
T  410184 atgacttccctacattccataatttgatccatttggtgatcaactacgacggggatatagttgtacaagtgctccaccattgccctaagcttcaaaatct 410283  T
Q  117 tgaactttatcaggtttgtttgttaaatttaacaatcat 155  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  410284 tgaactttatcgggtttgtttgttaaatttaagaatcat 410322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 965601 - 965463
Alignment:
Q  17 atgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatct 116  Q
    ||||||||||||| ||| | |||||||||   ||  |||||  ||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||    
T  965601 atgactttcctacgttcaacaatttgacttggttattgctcaactatgattgggatatagttgttcaagtgctccatcattgccctaagcttcaaaatct 965502  T
Q  117 tgaactttatcaggtttgtttgttaaatttaacaatcat 155  Q
    |||||||||||||||||||||||||||||||||||||||    
T  965501 tgaactttatcaggtttgtttgttaaatttaacaatcat 965463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 821078 - 821214
Alignment:
Q  17 atgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatct 116  Q
    |||||||||||||||| ||||||||||| |||||||||| |  |||||||||| |||||||||||   |||||||||||||||||||| |||||||||||    
T  821078 atgactttcctacatttcataatttgacccatttggtgcacaactatgattggaatatagttgtatgggtgctccaccattgccctaagcttcaaaatct 821177  T
Q  117 tgaactttatcaggtttgtttgttaaatttaacaatc 153  Q
    |||||||||||||||||| ||||||| ||||| ||||    
T  821178 tgaactttatcaggtttgcttgttaagtttaagaatc 821214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 974146 - 974016
Alignment:
Q  18 tgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatctt 117  Q
    |||||||||||| ||| | |||||||||   || ||||||  ||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||    
T  974146 tgactttcctacgttcaacaatttgacttggttagtgctcaactatgattgggatatagttgttcaagtgctccatcattgccctaagcttcaaaatctt 974047  T
Q  118 gaactttatcaggtttgtttgttaaatttaa 148  Q
    || ||||||||||||||||||||||||||||    
T  974046 gacctttatcaggtttgtttgttaaatttaa 974016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 301 - 516
Target Start/End: Complemental strand, 965300 - 965079
Alignment:
Q  301 tgttccaggttgtctttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttatt 400  Q
    ||||||| |||||||| ||||||||||||||||||| |||||| |||| |||| || | |||||| |||  || |||||||||||||||| || ||||||    
T  965300 tgttccaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgctagcaagatttatt 965201  T
Q  401 cttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctcta------aaatagaaagagtgttatcctcatgtccaagggctt 494  Q
    || |||||||| ||||||||||||||||||||||| ||||| | |  |||| | ||||      || |||||||||| ||||| |||||||  |||||||    
T  965200 ctggagaatgcaagagttttagaaactatgtcaatgtggtgctacacgaaagggtctaaagtagaattagaaagagtattatcatcatgtcatagggctt 965101  T
Q  495 cttcaacatgtaaactttcaat 516  Q
    ||||| ||||| |||| |||||    
T  965100 cttcagcatgtcaactctcaat 965079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 40 - 144
Target Start/End: Complemental strand, 982193 - 982089
Alignment:
Q  40 ttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtttgt 139  Q
    ||||||||||||||||||  |||||||||| |||||||||||| ||||||||||||||||  ||| |||||||||||||| |||||||||||||||||||    
T  982193 ttgactcatttggtgctcaactatgattggaatatagttgtacgagtgctccaccattgctttaagcttcaaaatcttgacctttatcaggtttgtttgt 982094  T
Q  140 taaat 144  Q
    |||||    
T  982093 taaat 982089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 17 - 144
Target Start/End: Original strand, 1403192 - 1403319
Alignment:
Q  17 atgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatct 116  Q
    |||||||||||||||||||||||||||||||| ||||||||  |||| | || |||||| |||||||||||||| ||||||||||||| |||||||||||    
T  1403192 atgactttcctacattccataatttgactcatctggtgctcaactataactgtgatataattgtacaagtgctctaccattgccctaagcttcaaaatct 1403291  T
Q  117 tgaactttatcaggtttgtttgttaaat 144  Q
    |||  ||||| |||| ||| | ||||||    
T  1403292 tgacttttatgaggtatgtgtcttaaat 1403319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 301 - 517
Target Start/End: Original strand, 1400007 - 1400220
Alignment:
Q  301 tgttccaggttgtctttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttatt 400  Q
    ||||||| |||||||||||| ||||||||||||||| | ||||||||| |||||   |  ||||| |||  || ||| ||||||| |||| |||||||||    
T  1400007 tgttccaagttgtctttcattaaaccttacaacttgcaatatgcgggactttga---tgaaggccaacaacgtaatcgcattatgttagcaaggtttatt 1400103  T
Q  401 cttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaa 500  Q
    ||  ||||||| |||||||||||||||||| |||||||||| | |  || | |  | |||  ||||||||| |||| |||||||||||||||||||  ||    
T  1400104 ctgcagaatgcaagagttttagaaactatgccaatctggtgctacatgagatggcccaaagcagaaagagtattattctcatgtccaagggcttctgtaa 1400203  T
Q  501 catgtaaactttcaatt 517  Q
    ||||| |||||||||||    
T  1400204 catgtcaactttcaatt 1400220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 301 - 542
Target Start/End: Original strand, 821325 - 821570
Alignment:
Q  301 tgttccaggttgtctttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttatt 400  Q
    ||||||| ||||  |||||| ||||||||||||||| ||||||||||| |||| | || |||||| ||| ||| ||||||||||| |||| |  ||||||    
T  821325 tgttccaagttgcgtttcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaatgtaatcacattatgttagcaatatttatt 821424  T
Q  401 cttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaa 500  Q
    ||  |||||||||||||||||||||||||| |||||||| |   |   ||||  ||| ||||||||||    |||||  |||| |||||||||||| |||    
T  821425 ctgaagaatgcgagagttttagaaactatgacaatctggagcaacaataaacaatctgaaatagaaagtcgattatctccatgcccaagggcttctgcaa 821524  T
Q  501 catgtaaactttca----attaaaaacatatatgattatgtaagta 542  Q
    ||||| ||||||||    ||| | |||||||| |||||||||||||    
T  821525 catgtcaactttcattttattgataacatatacgattatgtaagta 821570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 17 - 125
Target Start/End: Original strand, 1399487 - 1399595
Alignment:
Q  17 atgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatct 116  Q
    |||||||| ||||||||||||||||||||||| ||||||||  ||||   || |||||| |||||||||||||||||||||||||||| |||||||||||    
T  1399487 atgacttttctacattccataatttgactcatctggtgctcaactatagctgtgatataattgtacaagtgctccaccattgccctaagcttcaaaatct 1399586  T
Q  117 tgaacttta 125  Q
    |||| ||||    
T  1399587 tgaatttta 1399595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 302 - 517
Target Start/End: Original strand, 1403726 - 1403941
Alignment:
Q  302 gttccaggttgtctttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattc 401  Q
    |||||| |||| ||||||| ||||||||||||||| | ||||||||| ||||   ||  || || |||  || ||| ||||||| |||| ||||||||||    
T  1403726 gttccaagttgcctttcattaaaccttacaacttgcaatatgcgggactttgttgttgtagaccaacaccgtaatcgcattatgttagcaaggtttattc 1403825  T
Q  402 ttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaac 501  Q
    | || ||||| ||||||||||||||||||||||||||||| | |  || | |  |||||  ||||||||| |||||||||||||||| ||| ||| ||||    
T  1403826 tggataatgcaagagttttagaaactatgtcaatctggtgctacaagagatggcctaaagcagaaagagtattatcctcatgtccaaaggcatctgcaac 1403925  T
Q  502 atgtaaactttcaatt 517  Q
    |||| ||||| |||||    
T  1403926 atgtcaacttacaatt 1403941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 322 - 517
Target Start/End: Original strand, 410490 - 410685
Alignment:
Q  322 aaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattcttgagaatgcgagagtttta 421  Q
    ||||||||||||||| ||||| ||||| || | |||| ||||||||||   || |||||||||| |||| |  ||||||||  ||||||| |||||||||    
T  410490 aaaccttacaacttgcactattcgggacttcgcatttgcaggcctacaacattgtcacattatgttagcaaaatttattctaaagaatgcaagagtttta 410589  T
Q  422 gaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttcaatt 517  Q
      ||||||| | |||| |||   |  |||||  |||||| |||||||| | |||||||||||||||||||||||| |||||||| |||||||||||    
T  410590 cgaactatgactatcttgtgcaacaagaaacagtctaaagtagaaagactattatcctcatgtccaagggcttctacaacatgtcaactttcaatt 410685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 292 - 439
Target Start/End: Complemental strand, 973874 - 973727
Alignment:
Q  292 tccaaaaaatgttccaggttgtctttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagct 391  Q
    |||||||  ||||||| |||||||| ||||||||||||||||||| |||||| |||| |||| || | |||||| |||  || ||||||||||| ||||     
T  973874 tccaaaatttgttccaagttgtcttacatcaaaccttacaacttgcactatgtgggactttgcatatgcaggccaacaacgtaatcacattatgttagca 973775  T
Q  392 aggtttattcttgagaatgcgagagttttagaaactatgtcaatctgg 439  Q
    || |||||||| ||||| || ||||||||| ||||||||  |||||||    
T  973774 agatttattctggagaacgcaagagttttacaaactatgaaaatctgg 973727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 34 - 135
Target Start/End: Complemental strand, 989874 - 989773
Alignment:
Q  34 cataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggttt 133  Q
    ||||||||||| || |||| ||||  | || |||||||| | || ||||||||||||||||| |||||||| |||||||||||  |||||||||||||||    
T  989874 cataatttgacccacttggagctctacaataattgggatttggtagtacaagtgctccaccactgccctaagcttcaaaatctccaactttatcaggttt 989775  T
Q  134 gt 135  Q
    ||    
T  989774 gt 989773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 435
Target Start/End: Complemental strand, 957934 - 957801
Alignment:
Q  302 gttccaggttgtctttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagctaggtttattc 401  Q
    |||||| |||| ||||||| ||||||||||||||| ||||||||||| |||| | || |||||| |||  || ||||  ||||  ||||    |||||||    
T  957934 gttccaagttgcctttcattaaaccttacaacttgcactatgcgggactttgcacttgcaggccaacaaagtaatcatcttattttagcattatttattc 957835  T
Q  402 ttgagaatgcgagagttttagaaactatgtcaat 435  Q
    |  ||||||||||||||||||||||| |||||||    
T  957834 tgaagaatgcgagagttttagaaactttgtcaat 957801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 824815 - 824935
Alignment:
Q  17 atgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatct 116  Q
    ||||| ||||||| || ||||||||||| ||  ||| ||||| |||||  | |||| | || | |||| |||||||||| | |||||| ||||| |||||    
T  824815 atgacattcctacctttcataatttgacccacctggagctccactatgtattggatttggtagcacaactgctccaccacttccctaagcttcagaatct 824914  T
Q  117 tgaactttatcaggtttgttt 137  Q
    ||||||||||| |||||||||    
T  824915 tgaactttatcgggtttgttt 824935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 83 - 136
Target Start/End: Original strand, 963576 - 963629
Alignment:
Q  83 aagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtt 136  Q
    |||||||| |||| |||||||| ||||||||||| || ||||||||||||||||    
T  963576 aagtgctctaccactgccctaaacttcaaaatctcgagctttatcaggtttgtt 963629  T

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Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 45810622 - 45810484
Alignment:
Q  17 atgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatct 116  Q
    ||||||||||||||||| |||||||||||||||||||| ||  |||||||||||||||||||||||||||||| || ||||| ||||| ||||||| |||    
T  45810622 atgactttcctacattcaataatttgactcatttggtggtcaactatgattgggatatagttgtacaagtgcttcagcattgtcctaagcttcaaagtct 45810523  T
Q  117 tgaactttatcaggtttgtttgttaaatttaacaatcat 155  Q
     || |||||||||||||| |||||||||||||| |||||    
T  45810522 cgacctttatcaggtttgcttgttaaatttaacgatcat 45810484  T

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Target: chr3; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 272 - 517
Target Start/End: Complemental strand, 45810366 - 45810121
Alignment:
Q  272 gatcaagaaaactgggttcgtccaaaaaatgttccaggttgtctttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagt 371  Q
    ||||||||||||||||    |||||||  |||||||  ||| ||||||| |||||| || ||||| ||||||||||| |||| |||| ||||| ||||      
T  45810366 gatcaagaaaactgggcctatccaaaatctgttccaacttgcctttcattaaacctcacgacttgcactatgcgggactttgcatttgcaggcttacaac 45810267  T
Q  372 gttatcacattatgctagctaggtttattcttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagt 471  Q
    || ||||  ||||| |||| |||||||||||  ||||||| | |||||||||||||||| |||| |||||  || | ||||| ||||||||||||| | |    
T  45810266 gtaatcatgttatgttagcaaggtttattctgaagaatgcaaaagttttagaaactatgacaatttggtgcagcagaaaacggtctaaaatagaaaaact 45810167  T
Q  472 gttatcctcatgtccaagggcttcttcaacatgtaaactttcaatt 517  Q
     ||||| |||||||||||||||||| ||| |||| |||||||||||    
T  45810166 attatcttcatgtccaagggcttctgcaaaatgtcaactttcaatt 45810121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 49426790 - 49426733
Alignment:
Q  81 acaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtttg 138  Q
    |||||||||| | ||||||||||||||||||||| |||||||   |||||||||||||    
T  49426790 acaagtgctcaatcattgccctaaccttcaaaatattgaactcagtcaggtttgtttg 49426733  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 136
Target Start/End: Original strand, 43359748 - 43359805
Alignment:
Q  79 gtacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtt 136  Q
    |||||||||||| | | ||||||||||||||||||| |||| |||  |||||||||||    
T  43359748 gtacaagtgctcaatccttgccctaaccttcaaaatgttgagcttagtcaggtttgtt 43359805  T

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Target: chr7 (Bit Score: 78; Significance: 5e-36; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 292 - 517
Target Start/End: Original strand, 12105490 - 12105715
Alignment:
Q  292 tccaaaaaatgttccaggttgtctttcatcaaaccttacaacttgtactatgcgggaatttgaattttcaggcctacagtgttatcacattatgctagct 391  Q
    |||||||  |||||||||||| |||||||||||||||| ||||||||| || || || |||| | ||  |||||||||| |||||||||||||| ||||     
T  12105490 tccaaaatctgttccaggttgcctttcatcaaaccttagaacttgtacgatccgtgactttgcaattggaggcctacagagttatcacattatgttagca 12105589  T
Q  392 aggtttattcttgagaatgcgagagttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaaggg 491  Q
    |  ||||||||  ||||| | | ||||||||||| ||||||||||||||| | ||||||||  ||| |||||||||||   ||| |||| ||| |||| |    
T  12105590 aaatttattctgaagaattcaacagttttagaaaatatgtcaatctggtgcttcgggaaacagtctgaaatagaaagacgattaacctcgtgttcaagag 12105689  T
Q  492 cttcttcaacatgtaaactttcaatt 517  Q
    ||||| |||||||| |||||||||||    
T  12105690 cttctgcaacatgtcaactttcaatt 12105715  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 23 - 155
Target Start/End: Original strand, 12105209 - 12105341
Alignment:
Q  23 ttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaact 122  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||||||||||  |  | |||| |||| ||| ||||| |||||||||||||| ||    
T  12105209 ttcctacattccataatttgactcatttggtgctctgctataattgggatatagttccaagaatgctgcacctttgtcctaagcttcaaaatcttgacct 12105308  T
Q  123 ttatcaggtttgtttgttaaatttaacaatcat 155  Q
    || |||||||||||| |||||||||||||||||    
T  12105309 ttttcaggtttgtttcttaaatttaacaatcat 12105341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 24 - 153
Target Start/End: Complemental strand, 1446139 - 1446010
Alignment:
Q  24 tcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaactt 123  Q
    ||||||||||||||||||||||||||||||||||  |||   ||||| |||||||  ||  |||||| ||| ||||||||| ||||||||| ||||| ||    
T  1446139 tcctacattccataatttgactcatttggtgctcagctacagttggggtatagttcaacgtgtgctctacctttgccctaagcttcaaaatattgaattt 1446040  T
Q  124 tatcaggtttgtttgttaaatttaacaatc 153  Q
    |||||||||||||| |||| ||||||||||    
T  1446039 tatcaggtttgtttcttaattttaacaatc 1446010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 1459390 - 1459324
Alignment:
Q  86 tgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtttgttaaatttaacaat 152  Q
    |||||||| ||||||| || ||||||| |||||||||||||||||||||||| |||| |||||||||    
T  1459390 tgctccacgattgccccaagcttcaaactcttgaactttatcaggtttgtttcttaattttaacaat 1459324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 415 - 514
Target Start/End: Complemental strand, 1445771 - 1445672
Alignment:
Q  415 agttttagaaactatgtcaatctggtgttgcgggaaacgctctaaaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca 514  Q
    ||||||||||||||||||||| ||||| | | | ||||| ||| | ||||||||||   || |||||||| ||||||||||| ||||||||||| |||||    
T  1445771 agttttagaaactatgtcaatttggtgcttcagaaaacgatctgagatagaaagagaactaacctcatgttcaagggcttctgcaacatgtaaattttca 1445672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 17 - 136
Target Start/End: Complemental strand, 28449916 - 28449797
Alignment:
Q  17 atgactttcctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatct 116  Q
    |||| |||||||| ||| | ||||||||||| |||||| ||  |||  ||  ||||||  || || |||||||  ||||||| |||||||||||||| ||    
T  28449916 atgattttcctaccttcaacaatttgactcacttggtgatcaactactatctggatatgtttataaaagtgctttaccattgtcctaaccttcaaaagct 28449817  T
Q  117 tgaactttatcaggtttgtt 136  Q
    ||| ||||||||||||||||    
T  28449816 tgagctttatcaggtttgtt 28449797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 1333546 - 1333502
Alignment:
Q  92 accattgccctaaccttcaaaatcttgaactttatcaggtttgtt 136  Q
    ||||||||||||| |||||||  ||||||||| ||||||||||||    
T  1333546 accattgccctaagcttcaaaggcttgaacttgatcaggtttgtt 1333502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 9e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 25 - 136
Target Start/End: Original strand, 36199053 - 36199164
Alignment:
Q  25 cctacattccataatttgactcatttggtgctcctctatgattgggatatagttgtacaagtgctccaccattgccctaaccttcaaaatcttgaacttt 124  Q
    ||||| ||| ||||||||||||| |||||| ||  |||| ||| ||||||  || || ||||||| ||||| |||||||| ||||||| |||||||||||    
T  36199053 cctaccttcaataatttgactcacttggtgatcaactattatttggatatgtttatagaagtgcttcaccactgccctaaacttcaaattcttgaacttt 36199152  T
Q  125 atcaggtttgtt 136  Q
    | ||||||||||    
T  36199153 accaggtttgtt 36199164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 80 - 136
Target Start/End: Complemental strand, 48675539 - 48675483
Alignment:
Q  80 tacaagtgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgtt 136  Q
    |||||| ||||||||| |||||||| ||||||||||| || ||||||||||||||||    
T  48675539 tacaagcgctccaccactgccctaaacttcaaaatctcgagctttatcaggtttgtt 48675483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 459 - 514
Target Start/End: Complemental strand, 48675153 - 48675098
Alignment:
Q  459 aaatagaaagagtgttatcctcatgtccaagggcttcttcaacatgtaaactttca 514  Q
    |||||||||| |  |||||||||||||||||||| ||| |||||||| ||||||||    
T  48675153 aaatagaaagggaattatcctcatgtccaagggcctctgcaacatgtcaactttca 48675098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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