View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19734_low_1 (Length: 769)
Name: NF19734_low_1
Description: NF19734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19734_low_1 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 630; Significance: 0; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 630; E-Value: 0
Query Start/End: Original strand, 16 - 751
Target Start/End: Original strand, 5174246 - 5174957
Alignment:
| Q |
16 |
agggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174246 |
agggcagatagtgttgccggtgttctatgatgttgatccttcggatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcaga |
5174345 |
T |
|
| Q |
116 |
atttcaaagaagaaaagcacgtccctgaaatggagagatgcacttcgtgaggctgctgagcttgctggctttgtagttccaaatttcaggtaatttaatt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5174346 |
atttcaaagaagaaaagcacgtccctgaaatggagagatgcacttcgtgaggctgctgagcttgctggcttt-------------tcaggtaatttaatt |
5174432 |
T |
|
| Q |
216 |
caaccgttacaatacttctatattggagatgttataccaattgtcttgggtaacaggtttttatcaatgctggaaatgattggaattacactttttaatt |
315 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174433 |
caactgttacaatacttctatattggagatgttataccaattgtcttgggtaacaggtttttatcaatgctggaaatgattggaattacactttttaatt |
5174532 |
T |
|
| Q |
316 |
tgtatgtttaatttttctttggtacactttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagac |
415 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5174533 |
tgtatgttcaatttttctttggta-----------ggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattgacaagacagac |
5174621 |
T |
|
| Q |
416 |
ttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgataggga |
515 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174622 |
ttgtttgttgctgataatccggtgggactcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgataggga |
5174721 |
T |
|
| Q |
516 |
tgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattag |
615 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174722 |
tgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattag |
5174821 |
T |
|
| Q |
616 |
ggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattca |
715 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5174822 |
ggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattca |
5174921 |
T |
|
| Q |
716 |
ggaaaagtaatattaaaggatagactttgtcataag |
751 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5174922 |
ggaaaagtattattaaaggatagactttgtcataag |
5174957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 85 - 751
Target Start/End: Original strand, 5276130 - 5276784
Alignment:
| Q |
85 |
tggaaaagcgttccaaagtctcttgagcagaatttcaaagaagaaaagcacgtccctgaaatggagagatgcacttcgtgaggctgctgagcttgctggc |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
5276130 |
tggaaaagcgttccaaagtctcttgagcagaattttaaagaagaaaagcacatccctgaaatggagagatgcacttcgtgaggttgctgagattgctggc |
5276229 |
T |
|
| Q |
185 |
tttgtagttccaaatttcaggtaatttaattcaaccgttacaatacttctatattggagatgttataccaattgtcttgggtaacaggtttttatcaatg |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5276230 |
tttgtagttccaaatttcaggtaatttaattcaaccgttacaatacttctatattggagatgttataccaattgtcttgggtaacaggtttttatcaatg |
5276329 |
T |
|
| Q |
285 |
ctggaaatgattggaattacactttttaatttgtatgtttaatttttctttggtacactttttgtaggaatgaaagtgaagcgattaagaatattgttga |
384 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5276330 |
ctggaaatgattggaattacactttttaatttgtatgtttaatttttctttggtacactttttgtaggaatgaaagtgaagcgattaagaatattgttga |
5276429 |
T |
|
| Q |
385 |
caaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagacatc |
484 |
Q |
| |
|
|||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
5276430 |
caaagtttcatgttttattgacaagacatgcttgtttgttgctgataatccagtgggactcaaatctcgagtgcaagatatgattccattgctagacatc |
5276529 |
T |
|
| Q |
485 |
caacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaatt |
584 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5276530 |
caacaatctaatgatgttctactggtagggatgtggggtatgggacgtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaatt |
5276629 |
T |
|
| Q |
585 |
ttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaagg |
684 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5276630 |
ttgaaggtaggagcttcattcccaatattagggaagtttggggg------------caagtggatttacaacaacaacttctatctgatatctttaaagg |
5276717 |
T |
|
| Q |
685 |
aacgtcgaccaagatacaaagtattgattcaggaaaagtaatattaaaggatagactttgtcataag |
751 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5276718 |
aacgtcgaccaagatacaaagtattgattcaggaaaagtaatattaaaggatagacttcgtcataag |
5276784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 5692924 - 5692721
Alignment:
| Q |
16 |
agggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5692924 |
agggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcaga |
5692825 |
T |
|
| Q |
116 |
atttcaaagaagaaaagcacgtccctgaaatggagagatgcacttcgtgaggctgctgagcttgctggctttgtagttccaaatttcaggtaatttaatt |
215 |
Q |
| |
|
||||||||||||| | || ||| |||||||||||||| || ||| |||||| ||||| ||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
5692824 |
atttcaaagaagacagacaagtcgctgaaatggagagacgcgcttagtgaggttgctgggcttgctggctttgtagttccaaatttcaggtagtttcatt |
5692725 |
T |
|
| Q |
216 |
caac |
219 |
Q |
| |
|
|||| |
|
|
| T |
5692724 |
caac |
5692721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 136; E-Value: 2e-70
Query Start/End: Original strand, 16 - 155
Target Start/End: Original strand, 5275992 - 5276131
Alignment:
| Q |
16 |
agggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcaga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5275992 |
agggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcaga |
5276091 |
T |
|
| Q |
116 |
atttcaaagaagaaaagcacgtccctgaaatggagagatg |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
5276092 |
atttcaaagaagaaaagcacgtccctgaaattgagagatg |
5276131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 328 - 751
Target Start/End: Original strand, 5341362 - 5341785
Alignment:
| Q |
328 |
ttttctttggtacactttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgct |
427 |
Q |
| |
|
||||||||| | || ||||| |||||||||||| || || || ||| |||| || || |||||| | || || |||||||||||||||||||||||| | |
|
|
| T |
5341362 |
ttttctttgattcattttttataggaatgaaagcgaggctatcaaggatatcgtcgaaaaagttacgcgcttgcttaacaagacagacttgtttgttgtt |
5341461 |
T |
|
| Q |
428 |
gataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgg |
527 |
Q |
| |
|
|||||||||| ||| | ||||| ||| ||||||||||||||||| |||| || ||||||||||| |||||| ||||||| |||||||||||||||||| |
|
|
| T |
5341462 |
gataatccagcgggggttgaatcccgattgcaagatatgattcaactgcttgatatccaacaatcaaatgatattctactattagggatgtggggtatgg |
5341561 |
T |
|
| Q |
528 |
gaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggg |
627 |
Q |
| |
|
|||| |||||||| |||||| | | |||| |||| || ||| | || | || |||||||||||||| ||| || | ||||||||||||||||||| |
|
|
| T |
5341562 |
gaggaattggtaagactaccattgtgaaagccatttataataaacttggccacaactttgaaggtaggagtttccttgcaaatattagggaagtttggga |
5341661 |
T |
|
| Q |
628 |
gcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaagtaata |
727 |
Q |
| |
|
|||||| | |||||| || |||||||| ||| |||||| | ||||||| |||| ||| | || |||||||||| ||||| || |||||||| ||| |
|
|
| T |
5341662 |
gcaaccggatggacagttgcatttacaagaacgacttcttttcgatatctgcaaagaaacaacaacaaagatacaaaacattgagtcgggaaaagttata |
5341761 |
T |
|
| Q |
728 |
ttaaaggatagactttgtcataag |
751 |
Q |
| |
|
|||||||||||||| ||||||||| |
|
|
| T |
5341762 |
ttaaaggatagactctgtcataag |
5341785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 330 - 750
Target Start/End: Complemental strand, 5356954 - 5356528
Alignment:
| Q |
330 |
ttctttggtacactttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctga |
429 |
Q |
| |
|
||||||||| | |||||||||||||||||||||||| || ||| |||||||| | || || ||||||| || ||||||||||||| ||||||||| | |
|
|
| T |
5356954 |
ttctttggtttattttttgtaggaatgaaagtgaagctatcaaggatattgttaaaaatattacacgtttgcttgacaagacagacttatttgttgctaa |
5356855 |
T |
|
| Q |
430 |
taatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagac------atccaacaatctaatgatgttctactgatagggatgtggggt |
523 |
Q |
| |
|
|||||| |||||| | |||||||| ||||||||||||||| | ||||||| ||||||||||| ||||||||| | || |||||||||||||| |
|
|
| T |
5356854 |
taatccggtgggagttgaatctcgtgtgcaagatatgattaagctgctagaacaagatatccaacaatcaaatgatgttttccttctagggatgtggggt |
5356755 |
T |
|
| Q |
524 |
atgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagttt |
623 |
Q |
| |
|
|||||||| |||| ||||| ||| | | |||| ||||| ||| ||||| || || ||||||| ||||| |||||| || | |||||||||||||||| |
|
|
| T |
5356754 |
atgggaggagttggcaaaacaaccatcggaaaagctatttacaataaaattggccgcgattttgatggtagaagcttccttgcaaatattagggaagttt |
5356655 |
T |
|
| Q |
624 |
gggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaagt |
723 |
Q |
| |
|
||| | || ||||| |||||| |||||||| |||||||||| |||||||||| |||| ||| | ||||| |||||||| ||||| |||||| | |
|
|
| T |
5356654 |
gggaggaaaaagctggccaagtgaatttacaagaacaacttctctctgatatctgcaaagacacgacaaccaaaatacaaagcattgaaaatggaaaaat |
5356555 |
T |
|
| Q |
724 |
aatattaaaggatagactttgtcataa |
750 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
5356554 |
catattaaaggatagactttgtcataa |
5356528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 343 - 750
Target Start/End: Original strand, 5368137 - 5368550
Alignment:
| Q |
343 |
tttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtggga |
442 |
Q |
| |
|
||||||||||||||||||| | || || || |||||||||| || ||| | ||| || |||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
5368137 |
tttttgtaggaatgaaagtaaggctatccaggatattgttgaaaatgttacgcgtaagcttgacaagacagaattgtttattgctgataatccagtggga |
5368236 |
T |
|
| Q |
443 |
ctcgaatctcgagtgcaagatatgattcaatt------gctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattg |
536 |
Q |
| |
|
| |||||||||||||||| |||||||||| | || ||| ||||||||||| ||||||||||| || | ||||||||||||||||| || ||| |
|
|
| T |
5368237 |
gttgaatctcgagtgcaaggtatgattcaactaatggagcaagatatccaacaatcaaatgatgttcttctactggggatgtggggtatggggggagttg |
5368336 |
T |
|
| Q |
537 |
gtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgc |
636 |
Q |
| |
|
||||||| ||| | ||||||| ||||| ||| ||||| || || |||||||||||||| |||||| || | ||||||||||||||||||| | || ||| |
|
|
| T |
5368337 |
gtaaaacaaccattgccaaagctatttacaataaaattggccgcaattttgaaggtagaagcttccttgcaaatattagggaagtttgggaggaaaatgc |
5368436 |
T |
|
| Q |
637 |
tggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaagtaatattaaaggat |
736 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| | |||||||| |||| | | | ||||| || ||||| ||||| | |||||| | |||||||||||| |
|
|
| T |
5368437 |
tggaaaagtgaatttacaagaacaacttctctttgatatctgcaaagatatggcaaccaaaattcaaagcattgaatgcggaaaaatcatattaaaggat |
5368536 |
T |
|
| Q |
737 |
agactttgtcataa |
750 |
Q |
| |
|
||||| || ||||| |
|
|
| T |
5368537 |
agactctgccataa |
5368550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 328 - 675
Target Start/End: Original strand, 5423415 - 5423768
Alignment:
| Q |
328 |
ttttctttggtacactttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgct |
427 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| || |||||| |||||||||| || ||| | ||| || |||||||||| |||||| ||||| |
|
|
| T |
5423415 |
ttttctttggtttattttttgtaggaatgaaagtgaggctattaaggatattgttgaaaatgttacgcgtaagcttgacaagacagatttgtttattgct |
5423514 |
T |
|
| Q |
428 |
gataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagac------atccaacaatctaatgatgttctactgatagggatgtggg |
521 |
Q |
| |
|
||||||| |||||| | ||||||||||||||||||||||||||| |||| ||| || ||||||| || ||||||| || |||||||||||| |
|
|
| T |
5423515 |
aataatcctgtgggagttgaatctcgagtgcaagatatgattcaactgctggaccaagatataaaacaatcagataatgttcttctactagggatgtggg |
5423614 |
T |
|
| Q |
522 |
gtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagt |
621 |
Q |
| |
|
||||||| || |||||||||| ||| | ||||||| ||||| ||| ||||| ||||| |||||||||||||| |||||| || | |||||||||||||| |
|
|
| T |
5423615 |
gtatggggggagttggtaaaacaaccattgccaaagctatttacaataaaattggtcgcaattttgaaggtagaagcttccttgcaaatattagggaagt |
5423714 |
T |
|
| Q |
622 |
ttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatat |
675 |
Q |
| |
|
||||| | || ||||||| ||||| |||||||| |||||||||| | |||||| |
|
|
| T |
5423715 |
ttgggaggaaaatgctggaaaagtgaatttacaagaacaacttctctttgatat |
5423768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 314 - 631
Target Start/End: Complemental strand, 5184299 - 5183983
Alignment:
| Q |
314 |
tttgtatgtttaatttttctttggtacactttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacag |
413 |
Q |
| |
|
|||||||||| || ||||||||||| || ||||| ||||||||||||||| || || || | |||||||| || ||| ||| ||| | |||||||| |
|
|
| T |
5184299 |
tttgtatgttcaacttttctttggtccatttttt-taggaatgaaagtgaggcaatcaaagacattgttgaaaatgttacacatttgctaggcaagacag |
5184201 |
T |
|
| Q |
414 |
acttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgatagg |
513 |
Q |
| |
|
| ||||| |||| |||||||| |||||| ||||||||||||| | |||| |||||||||||||||||||||||| ||| |||| |||| |||| |||| |
|
|
| T |
5184200 |
atttgttcattgcggataatccggtgggagtcgaatctcgagtacgagatgtgattcaattgctagacatccaacgatcaaatggtgttatactactagg |
5184101 |
T |
|
| Q |
514 |
gatgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatatt |
613 |
Q |
| |
|
||| |||||||||||||||||||||||||| || ||||||||| |||| ||| |||| ||||| |||||||| |||||||||||| || | |||||| |
|
|
| T |
5184100 |
gatctggggtatgggaggtattggtaaaacaacgttagccaaatccatttacaatgaaattggtcgcaattttgagggtaggagcttccttgcaaatatt |
5184001 |
T |
|
| Q |
614 |
agggaagtttgggggcaa |
631 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
5184000 |
agggaagtttgggagcaa |
5183983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 343 - 717
Target Start/End: Original strand, 5394726 - 5395100
Alignment:
| Q |
343 |
tttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtggga |
442 |
Q |
| |
|
||||||||||||||||||||| || || || | |||||||| || |||||||||| || |||| |||||||||||| ||||| || |||||||||| |
|
|
| T |
5394726 |
tttttgtaggaatgaaagtgacgcaatcaatgacattgttgaaaatatttcacgtttgcttgacaaaacagacttgtttattgctaattatccagtgggc |
5394825 |
T |
|
| Q |
443 |
ctcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaa |
542 |
Q |
| |
|
| |||||||| || | |||| ||||||| ||||||||||| || | | | ||||||||| |||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
5394826 |
gtggaatctcgggtacgagatgtgattcagttgctagacatacagcgacccaatgatgttgtactactagggatatggggtatgggaggtattggtaaaa |
5394925 |
T |
|
| Q |
543 |
ctaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgctggaca |
642 |
Q |
| |
|
| ||||||||||||| || | ||||| ||| ||||| |||||||| |||||||||||| || | |||||||||||||| |||| |||| || ||||| |
|
|
| T |
5394926 |
ccaccttagccaaagccatatacaacagaattggtcgcaattttgagggtaggagcttccttgcaaatattagggaagtgtgggagcaaaatgttggacc |
5395025 |
T |
|
| Q |
643 |
agtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcagg |
717 |
Q |
| |
|
|| || |||||| |||||||||| | |||||| | |||| |||| ||| |||||||||| ||||| ||||| |
|
|
| T |
5395026 |
ggttgacttacaaaaacaacttctctttgatatttgcaaagaaacgaagactaagatacaaaacattgagtcagg |
5395100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 405 - 750
Target Start/End: Original strand, 5431152 - 5431497
Alignment:
| Q |
405 |
acaagacagacttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttct |
504 |
Q |
| |
|
|||||| |||| |||| |||||||||| ||||||||| | || |||||| |||||||| | |||||| |||||||||||||||||| |||| ||| | |
|
|
| T |
5431152 |
acaagaaagacatgttcattgctgataagccagtgggaattgattctcgaatgcaagatgttattcaacggctagacatccaacaatcaaatggtgtaat |
5431251 |
T |
|
| Q |
505 |
actgatagggatgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcatt |
604 |
Q |
| |
|
||| | ||||||||||||||||| || || || ||||| || | || |||| |||| || ||||||| || || |||||||| ||||| ||| || |
|
|
| T |
5431252 |
actacttgggatgtggggtatggggggaatcggaaaaacaactattgcaaaagcaatttataatgaaatcggccgcaagtttgaagggaggagtttcctt |
5431351 |
T |
|
| Q |
605 |
cccaatattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaa |
704 |
Q |
| |
|
| ||| ||||||||||||||| ||||||| | |||||| ||||||||| |||||||||||||||||||||| | ||||||| ||||||||||||||| |
|
|
| T |
5431352 |
gcaaatgttagggaagtttgggagcaacctaccaaacaagtagatttacaagaacaacttctatctgatatcttcagaggaacgacgaccaagatacaaa |
5431451 |
T |
|
| Q |
705 |
gtattgattcaggaaaagtaatattaaaggatagactttgtcataa |
750 |
Q |
| |
|
|||||||||| || ||| | ||||||||||| || ||||||||||| |
|
|
| T |
5431452 |
gtattgattctgggaaaattatattaaaggacaggctttgtcataa |
5431497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 328 - 666
Target Start/End: Complemental strand, 5069411 - 5069067
Alignment:
| Q |
328 |
ttttctttggtacactttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgct |
427 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| | || || |||||||||| || ||| | ||| || ||||| ||||||||||| ||||| |
|
|
| T |
5069411 |
ttttctttggtttattttttgtaggaatgaaagtgatgttatagaggatattgttgaaaatgttacgcgtaagcttgacaaggcagacttgtttattgct |
5069312 |
T |
|
| Q |
428 |
gataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagac------atccaacaatctaatgatgttctactgatagggatgtggg |
521 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |||||||||||| |||| ||| ||||||| ||| ||||||||||| || |||||||||||| |
|
|
| T |
5069311 |
aataatccagtgggagttgaatctcgagtgcaggatatgattcaactgctggaccaagatatccaactatcaaatgatgttctccttctagggatgtggg |
5069212 |
T |
|
| Q |
522 |
gtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagt |
621 |
Q |
| |
|
|||||||||| |||||||||| ||| | ||||||| ||||| ||| ||||| || || |||||||||||||| |||||| || | |||||||||||||| |
|
|
| T |
5069211 |
gtatgggaggagttggtaaaacgaccattgccaaagctatttacaataaaattggccgcaattttgaaggtagaagcttccttgcaaatattagggaagt |
5069112 |
T |
|
| Q |
622 |
ttgggggcaacctgctggacaagtggatttacaacaacaacttct |
666 |
Q |
| |
|
||||| | |||||||| || || |||||||| |||||||||| |
|
|
| T |
5069111 |
ttgggatgagactgctggaaaattgaatttacaagaacaacttct |
5069067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 98; E-Value: 7e-48
Query Start/End: Original strand, 347 - 677
Target Start/End: Complemental strand, 5105193 - 5104857
Alignment:
| Q |
347 |
tgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtgggactcg |
446 |
Q |
| |
|
||||||||||||||||| | || ||| |||||||| |||| || | | ||| || |||||||||| |||||| ||||| ||||||| |||||| | | |
|
|
| T |
5105193 |
tgtaggaatgaaagtgaggttatcaaggatattgttaacaatgtaacgcatttgcttgacaagacagatttgtttattgctaataatccggtgggagttg |
5105094 |
T |
|
| Q |
447 |
aatctcgagtgcaagatatgattcaattgctagac------atccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaa |
540 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||| ||||||||||| ||||||||||| || |||||||||||||||||||||| ||||||| |
|
|
| T |
5105093 |
aatctcgagttcaagatatgattcaactgctagaccaagatatccaacaatcaaatgatgttctcctactagggatgtggggtatgggaggagttggtaa |
5104994 |
T |
|
| Q |
541 |
aactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgctgga |
640 |
Q |
| |
|
||| ||| | ||||||| ||||| ||| ||||| || | ||||||||| ||||| |||||| || | ||||||||||||||||||| |||| || ||| |
|
|
| T |
5104993 |
aacaaccattgccaaagctatttacaataaaattggccataattttgatggtagaagcttccttgcaaatattagggaagtttgggagcaaaatgttggc |
5104894 |
T |
|
| Q |
641 |
caagtggatttacaacaacaacttctatctgatatct |
677 |
Q |
| |
|
| ||| |||||||| || ||||||| | |||||||| |
|
|
| T |
5104893 |
cgggtgaatttacaagaaaaacttctctttgatatct |
5104857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 343 - 750
Target Start/End: Complemental strand, 5076050 - 5075643
Alignment:
| Q |
343 |
tttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtggga |
442 |
Q |
| |
|
|||| ||||||||||||||||||| || | |||| || || || |||||||||| || |||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
5076050 |
ttttcgtaggaatgaaagtgaagcaatcgacgatatagtggaaaatatttcacgtttgcttgacaagacagatttgttcattgctgataatccagtggga |
5075951 |
T |
|
| Q |
443 |
ctcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaa |
542 |
Q |
| |
|
||||||||||||| |||||||||||||| | || ||||||||||| | ||||| | |||| ||||||| ||||||||||| || |||||||||| |
|
|
| T |
5075950 |
gtcgaatctcgagtagaagatatgattcaacggttaaacatccaacaaaccaatgaaaatgtactactagggatttggggtatgggtgggattggtaaaa |
5075851 |
T |
|
| Q |
543 |
ctaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgctggaca |
642 |
Q |
| |
|
| ||| | || |||| |||| ||| ||||| |||||||| |||| ||||||||||||| || | ||||| ||||||||||||| |||| || ||||| |
|
|
| T |
5075850 |
ccaccattgcaaaagccatttacaataaaattggtcgtaaatttgcaggtaggagcttccttgcaaatatcagggaagtttgggagcaaaatgatggacc |
5075751 |
T |
|
| Q |
643 |
agtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaagtaatattaaaggatagactt |
742 |
Q |
| |
|
|| ||||||| |||||||||| | |||||| | |||| ||| || ||||||| ||||||||| || |||||| ||||||| ||||||||| |
|
|
| T |
5075750 |
ggtttgtttacaagaacaacttctttttgatatttgcaaagatacgaaaactaagatacgaagtattgagtcgggaaaaactatattaatggatagacta |
5075651 |
T |
|
| Q |
743 |
tgtcataa |
750 |
Q |
| |
|
|||||||| |
|
|
| T |
5075650 |
tgtcataa |
5075643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 416 - 750
Target Start/End: Complemental strand, 5134157 - 5133817
Alignment:
| Q |
416 |
ttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagaca------tccaacaatctaatgatgttctactga |
509 |
Q |
| |
|
|||||| ||||| |||||||||||||| | |||||||| ||| ||||||||||||||||||||||| | ||||||| ||||||||| |||| |
|
|
| T |
5134157 |
ttgtttattgctaataatccagtgggagttgaatctcgtatgctagatatgattcaattgctagacaaagatattgaacaatcaaatgatgttatacttc |
5134058 |
T |
|
| Q |
510 |
tagggatgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaa |
609 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||| | || |||| |||| ||| ||||| || || |||||||||||||||||||| || | || |
|
|
| T |
5134057 |
tagggatgtggggtatgggaggcgttggtaaaacaaccattgcgaaagccatttacaataaaattggccgcgattttgaaggtaggagcttccttgcaaa |
5133958 |
T |
|
| Q |
610 |
tattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtatt |
709 |
Q |
| |
|
||||||||||||||||| || | | ||| |||||||| |||||| |||||||||| | ||||||| |||| || | | || |||||||||| ||| |
|
|
| T |
5133957 |
tattagggaagtttgggagcgaaattttggtcaagtggaattacaagaacaacttctgtttgatatcaacaaagaaatgacaactaagatacaaaacatt |
5133858 |
T |
|
| Q |
710 |
gattcaggaaaagtaatattaaaggatagactttgtcataa |
750 |
Q |
| |
|
|| ||||||||| || |||||||||||||| || ||||| |
|
|
| T |
5133857 |
gagtcaggaaaaaatattttaaaggatagactctggcataa |
5133817 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 402 - 750
Target Start/End: Original strand, 5348147 - 5348501
Alignment:
| Q |
402 |
ttaacaagacagacttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagac------atccaacaatctaa |
495 |
Q |
| |
|
|||||||| |||| || ||| ||||| |||||||||||||| | |||||| || |||| |||||||||||| | || ||| || |||||||| || |
|
|
| T |
5348147 |
ttaacaaggcagatttatttattgctaataatccagtgggagttgaatctagattgcaggatatgattcaactactggaccaagatatacaacaatcaaa |
5348246 |
T |
|
| Q |
496 |
tgatgttctactgatagggatgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtagg |
595 |
Q |
| |
|
||||||||| || |||||||||||||||||||||| |||||||||| ||| | ||||||| ||||| ||| ||||| || || |||||||||||||| |
|
|
| T |
5348247 |
tgatgttctcctactagggatgtggggtatgggaggagttggtaaaacgaccattgccaaagctatttacaataaaattggccgcaattttgaaggtaga |
5348346 |
T |
|
| Q |
596 |
agcttcattcccaatattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgacca |
695 |
Q |
| |
|
|||||| || | ||||||||||||||||||| | || ||| | ||||| |||||||| |||||||||| | ||| |||| |||| | | | |||| |
|
|
| T |
5348347 |
agcttccttgcaaatattagggaagtttgggatgagactactgaaaaagtgaatttacaaaaacaacttctgtttgacatctgcaaagatatgacaacca |
5348446 |
T |
|
| Q |
696 |
agatacaaagtattgattcaggaaaagtaatattaaaggatagactttgtcataa |
750 |
Q |
| |
|
| |||||||| ||||| |||||| | ||||||||||||||||| || ||||| |
|
|
| T |
5348447 |
atatacaaagcattgaaagcggaaaaatcatattaaaggatagactctgccataa |
5348501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 407 - 741
Target Start/End: Original strand, 5093788 - 5094122
Alignment:
| Q |
407 |
aagacagacttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctac |
506 |
Q |
| |
|
|||||||| ||||| |||||||||| || |||||| | | ||||||||||||||| | ||| || || |||||||||||||||| |||||||| || | |
|
|
| T |
5093788 |
aagacagatttgttcattgctgataaacctgtgggagttggttctcgagtgcaagatgttattgaactgttagacatccaacaatcaaatgatgtactgc |
5093887 |
T |
|
| Q |
507 |
tgatagggatgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcc |
606 |
Q |
| |
|
| | ||||||||||||||||| || ||||||||||| ||| | || |||| ||| | || |||| || |||||||||||||||||||||||| || | |
|
|
| T |
5093888 |
tacttgggatgtggggtatgggggggattggtaaaacaaccattgcaaaagctatctataatgaaattggccgtaattttgaaggtaggagcttccttgc |
5093987 |
T |
|
| Q |
607 |
caatattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagt |
706 |
Q |
| |
|
||| ||||||||||||||| | ||||||| ||||| |||||||| |||||||||| | ||| |||| ||||| | | | | ||| |||||||| |
|
|
| T |
5093988 |
aaatgttagggaagtttgggatgagaatgctggaaaagtgaatttacaagaacaacttctctttgacatctgtaaagatatgacaatcaaaatacaaagc |
5094087 |
T |
|
| Q |
707 |
attgattcaggaaaagtaatattaaaggatagact |
741 |
Q |
| |
|
||||| |||||| | ||||||||||||||||| |
|
|
| T |
5094088 |
attgaaagtggaaaaatcatattaaaggatagact |
5094122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 478 - 750
Target Start/End: Complemental strand, 5692295 - 5692023
Alignment:
| Q |
478 |
agacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggt |
577 |
Q |
| |
|
||||||||||||||||||| |||||| ||| |||||||||||||| |||||||| ||||| ||||| ||| | || |||| |||| ||| ||||| || |
|
|
| T |
5692295 |
agacatccaacaatctaataatgttcgactaatagggatgtggggcatgggaggaattggcaaaaccaccattgcaaaagccatttacaataaaattggc |
5692196 |
T |
|
| Q |
578 |
cgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatct |
677 |
Q |
| |
|
|| ||||||||||| ||||||||| || | ||||| |||||||||||| |||| || ||||||||| |||||| ||||||||||| || ||||| | |
|
|
| T |
5692195 |
cgcaattttgaaggaaggagcttccttgcaaatataagggaagtttggatgcaaaatgttggacaagtatctttacagcaacaacttctctccgatattt |
5692096 |
T |
|
| Q |
678 |
ttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaagtaatattaaaggatagactttgtcataa |
750 |
Q |
| |
|
|||| ||| ||||||| ||||||| |||||| |||||||| | ||||| ||||||||| || ||||| |
|
|
| T |
5692095 |
gcaaagaaacaacgaccaatatacaaaacattgatgcaggaaaaaatacattaatggatagactctgccataa |
5692023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 407 - 750
Target Start/End: Complemental strand, 5159756 - 5159413
Alignment:
| Q |
407 |
aagacagacttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctac |
506 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||| | | ||||||||||||||| | ||| || |||||||||||||||| || |||||||| || | |
|
|
| T |
5159756 |
aagacagatttgttcattgctgataatcctgtgggagttggttctcgagtgcaagatgttattgaactgctagacatccaacactccaatgatgtactgc |
5159657 |
T |
|
| Q |
507 |
tgatagggatgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcc |
606 |
Q |
| |
|
| | ||||||||||||||||| || ||||| ||||| ||| | || |||| ||| | || |||| || |||||||||||||||||||||||| || | |
|
|
| T |
5159656 |
tacttgggatgtggggtatgggggggattggcaaaacaaccattgcaaaagctatctataatgaaattggccgtaattttgaaggtaggagcttccttgc |
5159557 |
T |
|
| Q |
607 |
caatattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagt |
706 |
Q |
| |
|
||| ||||||||||||||| | ||||||| ||||| ||||||| |||||||||| | ||| |||| |||| | | ||| ||| |||||||| |
|
|
| T |
5159556 |
aaatgttagggaagtttgggatgagaatgctggaaaagtgaatttacaggaacaacttctctttgacatctacaaagatatgacgatcaaaatacaaagc |
5159457 |
T |
|
| Q |
707 |
attgattcaggaaaagtaatattaaaggatagactttgtcataa |
750 |
Q |
| |
|
||||| |||||| | ||||||||||||||||| || ||||| |
|
|
| T |
5159456 |
attgaaagtggaaaaatcatattaaaggatagactctgccataa |
5159413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 405 - 675
Target Start/End: Complemental strand, 5149219 - 5148949
Alignment:
| Q |
405 |
acaagacagacttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttct |
504 |
Q |
| |
|
||||||| |||||||| |||||| |||||||||| ||| | ||| ||||||| ||||||||||||||| |||||||||||||| |||| |||||||| || |
|
|
| T |
5149219 |
acaagaccgacttgttcgttgctcataatccagtcggagttgaaactcgagtacaagatatgattcaactgctagacatccaaaaatcaaatgatgtact |
5149120 |
T |
|
| Q |
505 |
actgatagggatgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcatt |
604 |
Q |
| |
|
| | |||| |||||||||||||| || ||||| ||| | ||| | || |||| || | ||| ||||| || || ||||| ||||||||||| || | |
|
|
| T |
5149119 |
attactaggaatgtggggtatggggggaattggcaaatccaccattgcaaaagccatctacaataaaattggccgcaatttcgaaggtaggagttttcta |
5149020 |
T |
|
| Q |
605 |
cccaatattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatat |
675 |
Q |
| |
|
||||||||||| ||||||| | || || |||||| ||| |||||||||||||||||| | |||||| |
|
|
| T |
5149019 |
ggaaatattagggaggtttgggcgaaaaatgatggacatgtgtctttacaacaacaacttctctttgatat |
5148949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 20 - 211
Target Start/End: Original strand, 5380473 - 5380667
Alignment:
| Q |
20 |
cagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaattt |
119 |
Q |
| |
|
||||||||| | ||||||||||||||||||||||| | || ||||| |||||||| |||||||||||| |||| || ||||||||||||||| | ||| |
|
|
| T |
5380473 |
cagatagtgctaccggtgttctatgatgttgatcccttggaggtacgtcaccaaactggtgagtttggacaagcttttgaaagtctcttgagcaaacttt |
5380572 |
T |
|
| Q |
120 |
caaagaaga--aaag-cacgtccctgaaatggagagatgcacttcgtgaggctgctgagcttgctggctttgtagttccaaatttcaggtaattt |
211 |
Q |
| |
|
| ||||||| |||| | | | |||||||||||||| || |||| || |||||||| ||||||| |||||||||| ||| | |||||||||| |
|
|
| T |
5380573 |
cgaagaagaagaaagataagacgctgaaatggagagaggctcttcatggggctgctgcctttgctggatttgtagttctaaactccaggtaattt |
5380667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 343 - 488
Target Start/End: Original strand, 5444769 - 5444914
Alignment:
| Q |
343 |
tttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtggga |
442 |
Q |
| |
|
||||||||||||||||||||| | | || |||||||||||| |||||| ||| ||||||| |||||||||||| |||| |||||||||||||| |
|
|
| T |
5444769 |
tttttgtaggaatgaaagtgaggatgtcaaaggtattgttgacaacatttcacatttgcttaacaaaacagacttgtttattgcgaataatccagtggga |
5444868 |
T |
|
| Q |
443 |
ctcgaatctcgagtgcaagatatgattcaattgctagacatccaac |
488 |
Q |
| |
|
| |||||||||||| ||||| |||||||| |||| ||||||||| |
|
|
| T |
5444869 |
attgaatctcgagtgaaagatgtgattcaacagctacacatccaac |
5444914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 90
Target Start/End: Complemental strand, 5107789 - 5107707
Alignment:
| Q |
8 |
agaagcaaagggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaa |
90 |
Q |
| |
|
||||||| ||||||| | ||| | ||||||||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| |
|
|
| T |
5107789 |
agaagcatagggcaggtggtgcttccggtgttctatgatgttgatccctcagaagtacgtcatcaaactggtgagtttggaaa |
5107707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 124
Target Start/End: Complemental strand, 5149704 - 5149595
Alignment:
| Q |
15 |
aagggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcag |
114 |
Q |
| |
|
|||||||| | || ||||| ||||| |||||||| ||||| | || ||||| ||||||||| |||||||||| ||||| || ||||||||||||| || |
|
|
| T |
5149704 |
aagggcagttggttttgccagtgttttatgatgtagatccatgtgaagtacgtcaccaaacaagtgagtttggcaaagcatttcaaagtctcttgaatag |
5149605 |
T |
|
| Q |
115 |
aatttcaaag |
124 |
Q |
| |
|
|||||||||| |
|
|
| T |
5149604 |
aatttcaaag |
5149595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 5429836 - 5429905
Alignment:
| Q |
141 |
tgaaatggagagatgcacttcgtgaggctgctgagcttgctggctttgtagttccaaatttcaggtaatt |
210 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||| |||||||| ||||||||| ||||| ||||||||| |
|
|
| T |
5429836 |
tgaaatggagagacgcacttcgtgaggcagctgaccttgctggatttgtagttttaaattccaggtaatt |
5429905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 405 - 480
Target Start/End: Complemental strand, 5692482 - 5692407
Alignment:
| Q |
405 |
acaagacagacttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctaga |
480 |
Q |
| |
|
|||||| |||||||||||||||| || || |||||||| | ||| ||||||||||||||||||| |||||| |||| |
|
|
| T |
5692482 |
acaagaaagacttgtttgttgctaatcattcagtgggagttgaacctcgagtgcaagatatgatgcaattgttaga |
5692407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 510 - 683
Target Start/End: Complemental strand, 5286275 - 5286102
Alignment:
| Q |
510 |
tagggatgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaa |
609 |
Q |
| |
|
||||||||||||||||||| || ||||| ||||| ||| | | |||| |||| ||| || || || || |||||||| |||||||||||| || | || |
|
|
| T |
5286275 |
tagggatgtggggtatggggggaattggaaaaacaaccattacaaaagccatttacaataagattggccgcaattttgatggtaggagcttccttgcaaa |
5286176 |
T |
|
| Q |
610 |
tattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaag |
683 |
Q |
| |
|
||| ||||||| | ||| || ||||||||| |||| | ||||| |||||||| ||| |||||||| ||||| |
|
|
| T |
5286175 |
tataagggaagatggggcaaaaattgctggacaggtgggtctacaagaacaacttttatttgatatctgtaaag |
5286102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 5093038 - 5093146
Alignment:
| Q |
16 |
agggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcaga |
115 |
Q |
| |
|
|||||||||||| |||| |||||||| ||||| ||||| || || ||||| ||||| | ||| |||||||| ||||| || |||| |||||| | ||| |
|
|
| T |
5093038 |
agggcagatagttgtgccagtgttctacgatgtagatccctctgaagtacgtcaccagaaaggcgagtttggtaaagcatttcaaaatctcttaaataga |
5093137 |
T |
|
| Q |
116 |
atttcaaag |
124 |
Q |
| |
|
||||||||| |
|
|
| T |
5093138 |
atttcaaag |
5093146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 5160499 - 5160391
Alignment:
| Q |
16 |
agggcagatagtgttgccggtgttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcaga |
115 |
Q |
| |
|
|||||||||||| ||||| |||||||| ||||| ||||| || || ||||| ||||| | ||| ||||||| ||||| || |||| |||||| | ||| |
|
|
| T |
5160499 |
agggcagatagttttgccagtgttctacgatgtagatccctctgaagtacgtcaccagaaaggcaagtttggtaaagcatttcaaaatctcttaaataga |
5160400 |
T |
|
| Q |
116 |
atttcaaag |
124 |
Q |
| |
|
||||||||| |
|
|
| T |
5160399 |
atttcaaag |
5160391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 117
Target Start/End: Original strand, 5340679 - 5340758
Alignment:
| Q |
38 |
ttctatgatgttgatccttcagatgtacgacaccaaacaggtgagtttggaaaagcgttccaaagtctcttgagcagaat |
117 |
Q |
| |
|
||||| ||||||||||| ||||| |||| || |||||||| |||||||||||||| || |||| ||| |||| |||||| |
|
|
| T |
5340679 |
ttctacgatgttgatccctcagaaatacgtcatcaaacaggagagtttggaaaagcatttcaaaatcttttgaacagaat |
5340758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 5076959 - 5076882
Alignment:
| Q |
141 |
tgaaatggagagatgcacttcgtgaggctgctgagcttgctggctttgtagttccaaatttcaggtaatttaattcaa |
218 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||| ||| | || ||||| || | ||| ||||||||||||| ||||| |
|
|
| T |
5076959 |
tgaaatggagagatgtacttcgtgaagctgctggcctttcaggatttgtggtcctaaaattcaggtaatttatttcaa |
5076882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 118; Significance: 8e-60; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 8e-60
Query Start/End: Original strand, 405 - 750
Target Start/End: Complemental strand, 4126694 - 4126349
Alignment:
| Q |
405 |
acaagacagacttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttct |
504 |
Q |
| |
|
|||||||||||||||| ||||||||||||| || ||| ||||||||||||||||||||||||||||| | ||||||| ||||| || ||||||||||| |
|
|
| T |
4126694 |
acaagacagacttgttcattgctgataatcctgtcggagtcgaatctcgagtgcaagatatgattcaacttctagacactcaacagtcaaatgatgttct |
4126595 |
T |
|
| Q |
505 |
actgatagggatgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcatt |
604 |
Q |
| |
|
|||| | ||||||||||| ||||| || ||||||||||| ||| | || |||| |||| ||| ||||| || || |||||||||||||||||||| || |
|
|
| T |
4126594 |
actgctggggatgtgggggatgggtggaattggtaaaaccaccattgcaaaagccatttacaataaaattggccggaattttgaaggtaggagctttctt |
4126495 |
T |
|
| Q |
605 |
cccaatattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaa |
704 |
Q |
| |
|
| ||||| ||||| ||||||| |||| | ||||||||||| |||||||| |||||||| | | |||||| || |||| ||| | |||||||| |||| |
|
|
| T |
4126494 |
gcaaatataagggaggtttgggagcaagtttctggacaagtgtatttacaagaacaacttatgtatgatattttcaaagaaaccacaaccaagattcaaa |
4126395 |
T |
|
| Q |
705 |
gtattgattcaggaaaagtaatattaaaggatagactttgtcataa |
750 |
Q |
| |
|
|||||| ||||| ||| ||||||||||| ||||||||||||| |
|
|
| T |
4126394 |
atattgaatcagggaaatctatattaaaggaacgactttgtcataa |
4126349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 343 - 702
Target Start/End: Complemental strand, 4323421 - 4323062
Alignment:
| Q |
343 |
tttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtggga |
442 |
Q |
| |
|
|||||||||||| |||||||| | || ||| |||||||||| || ||| ||||||| | |||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
4323421 |
tttttgtaggaacgaaagtgaggttatcaaggatattgttgaaaatgttacacgtttactggacaagacagacttgttcgttgctgataatcctgtgggt |
4323322 |
T |
|
| Q |
443 |
ctcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaa |
542 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||||||| |||||| | |||||||||||||| ||||||||||||| ||||| || ||||| |||| |
|
|
| T |
4323321 |
atcgattctcgagtgcaagatatgattcaacttctagacactcaacaaacaaatgatgttctactactagggatgtgggggatgggtggaattggaaaaa |
4323222 |
T |
|
| Q |
543 |
ctaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgctggaca |
642 |
Q |
| |
|
| ||| | || || | |||| ||| ||||| ||||| |||||||||||||||||||| ||| | ||||||||||| ||||||||| || | ||| || |
|
|
| T |
4323221 |
ccaccgttgcaaaggccatttacaataaaattggtcgcaattttgaaggtaggagctttattgcaaatattagggaggtttgggggaaagattgtggtca |
4323122 |
T |
|
| Q |
643 |
agtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagataca |
702 |
Q |
| |
|
|||| || ||||| |||||||| | | |||||| ||||||| ||| | ||||||||||| |
|
|
| T |
4323121 |
agtgaatctacaagaacaacttatgtatgatatttttaaagaaaccacaaccaagataca |
4323062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 343 - 750
Target Start/End: Original strand, 4358093 - 4358500
Alignment:
| Q |
343 |
tttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtggga |
442 |
Q |
| |
|
||||||||||||||||||||| | || | | |||||||||| || ||| | ||||| || |||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
4358093 |
tttttgtaggaatgaaagtgaggttatcagggatattgttgaaaatgttactcgtttgcttgacaagacagacttgttcattgctgataatccagtagga |
4358192 |
T |
|
| Q |
443 |
ctcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaa |
542 |
Q |
| |
|
|||| |||||||||||||||||||||||| | ||||| | |||||||| || |||| |||||| ||||||||||||| ||||| || || || |||| |
|
|
| T |
4358193 |
gtcgattctcgagtgcaagatatgattcaactcctagaaactcaacaatcaaacgatgctctactactagggatgtgggggatgggtggaatcggaaaaa |
4358292 |
T |
|
| Q |
543 |
ctaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgctggaca |
642 |
Q |
| |
|
| ||| | || ||| |||| ||| ||||| ||||| |||||||||||||||||||| || ||||||||||| ||||||| |||| | ||||||| |
|
|
| T |
4358293 |
ccaccattgcaaaatccatttacaataaaattggtcgcaattttgaaggtaggagctttcttgaaaatattagggaggtttgggagcaagcctctggaca |
4358392 |
T |
|
| Q |
643 |
agtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaagtaatattaaaggatagactt |
742 |
Q |
| |
|
| || |||||||| ||| |||| | |||||| || |||| || | |||||||||||||| ||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
4358393 |
attgtatttacaagaacgacttatgaatgatattttgaaagacaccacaaccaagatacaaagcattgaatcaggaaaatctatattaaaggaaagactg |
4358492 |
T |
|
| Q |
743 |
tgtcataa |
750 |
Q |
| |
|
|||||||| |
|
|
| T |
4358493 |
tgtcataa |
4358500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 349 - 664
Target Start/End: Original strand, 4342631 - 4342946
Alignment:
| Q |
349 |
taggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtgggactcgaa |
448 |
Q |
| |
|
||||||||||||||| | || || |||||||||| || ||| |||||| || |||||||||||||||| |||||||| |||| || ||| |||| |
|
|
| T |
4342631 |
taggaatgaaagtgaggttatcaaagatattgttgaaaatgttatacgtttgcttgacaagacagacttgttcattgctgattatccggtcggagtcgat |
4342730 |
T |
|
| Q |
449 |
tctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaactacct |
548 |
Q |
| |
|
|||||||||||||||||||||||| | |||||| |||||||| |||||||||||||| ||||||||||||| ||||| || || || ||||| ||| |
|
|
| T |
4342731 |
tctcgagtgcaagatatgattcaacttatagacactcaacaatcaaatgatgttctactactagggatgtgggggatgggtggaatggggaaaaccacca |
4342830 |
T |
|
| Q |
549 |
tagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgctggacaagtgga |
648 |
Q |
| |
|
| || |||| |||| ||| ||||| ||||| |||||||||| |||||||| || | ||||||||||| ||||||| |||| | | ||||||||| | |
|
|
| T |
4342831 |
ttgcaaaagccatttacaataaaattggtcgcaattttgaagccaggagctttcttgcaaatattagggaggtttgggagcaagtttcaggacaagtgta |
4342930 |
T |
|
| Q |
649 |
tttacaacaacaactt |
664 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
4342931 |
tttacaagaacaactt |
4342946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 349 - 751
Target Start/End: Original strand, 4350920 - 4351322
Alignment:
| Q |
349 |
taggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtgggactcgaa |
448 |
Q |
| |
|
||||||||||||||| | || ||| ||||||||| || || ||||||| || |||||| |||||| || ||| ||||||||| |||||| ||||| |
|
|
| T |
4350920 |
taggaatgaaagtgaggttatcaagggtattgttgaaaatattacacgtttgtttgacaagatagacttattcattgttgataatcctgtgggagtcgaa |
4351019 |
T |
|
| Q |
449 |
tctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaactacct |
548 |
Q |
| |
|
|||| ||||||||||||||| || | ||||||| || ||||| || ||||||||||| |||||||||||||| ||||| || || || ||| | ||| |
|
|
| T |
4351020 |
tctcaggtgcaagatatgattaaacttctagacactcaccaatcaaaagatgttctactaatagggatgtgggggatgggtggaatcggcaaatccaccg |
4351119 |
T |
|
| Q |
549 |
tagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgctggacaagtgga |
648 |
Q |
| |
|
| || |||| |||| ||| ||||| || || ||||||||||||||||| || || | ||||||||||| ||| ||| |||| | |||||||| | | |
|
|
| T |
4351120 |
ttgcaaaagccatttacaataaaattggccgcaattttgaaggtaggagttttcttgcaaatattagggaggttggggagcaagtttctggacaacagca |
4351219 |
T |
|
| Q |
649 |
tttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaagtaatattaaaggatagactttgtcat |
748 |
Q |
| |
|
||||||| |||||||| || |||||| || |||| ||| | || |||||||||| ||||| || |||||| ||||||||||| ||||| |||||| |
|
|
| T |
4351220 |
tttacaaaaacaacttatagatgatattttcaaagaaacaacaacaaagatacaaaacattgagtcgggaaaatctatattaaaggaaagactctgtcat |
4351319 |
T |
|
| Q |
749 |
aag |
751 |
Q |
| |
|
||| |
|
|
| T |
4351320 |
aag |
4351322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 349 - 750
Target Start/End: Original strand, 4333241 - 4333642
Alignment:
| Q |
349 |
taggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtgggactcgaa |
448 |
Q |
| |
|
|||||| |||||||| | || ||| |||||||||| || ||| ||||||| || ||||||| |||||||| |||||||| |||| || ||| ||||| |
|
|
| T |
4333241 |
taggaacgaaagtgaggtcatcaaggatattgttgaaaatgttgcacgtttgcttgacaagactgacttgttcattgctgatcatccggtaggagtcgaa |
4333340 |
T |
|
| Q |
449 |
tctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaactacct |
548 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||| |||| ||| ||| | ||||||||| |||| |||||||| ||||| || ||||| ||||| || |
|
|
| T |
4333341 |
tctcgagtacaagatatgattcaacttctagacactcaactatcaaataaagttctactgctaggaatgtgggggatgggtgggattgggaaaaccacaa |
4333440 |
T |
|
| Q |
549 |
tagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgctggacaagtgga |
648 |
Q |
| |
|
| || || | |||| ||| ||||| || || || ||| ||||||||||||| || | ||||||||||| ||||||| | || | ||| |||||| | |
|
|
| T |
4333441 |
ttgcgaaggccatttacaataaaattggccgcaaatttcaaggtaggagctttcttgcaaatattagggaggtttgggagaaagattatggtcaagtgaa |
4333540 |
T |
|
| Q |
649 |
tttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagtattgattcaggaaaagtaatattaaaggatagactttgtcat |
748 |
Q |
| |
|
| ||||| |||||||| | | |||||| || |||| ||| | |||||||||||| || || |||||||| ||||||||||| ||||| |||||| |
|
|
| T |
4333541 |
tctacaagaacaacttatgtatgatattttcaaagaaaccacatccaagatacaaaacatagaagcaggaaaatatatattaaaggacagactatgtcat |
4333640 |
T |
|
| Q |
749 |
aa |
750 |
Q |
| |
|
|| |
|
|
| T |
4333641 |
aa |
4333642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 349 - 543
Target Start/End: Complemental strand, 4135857 - 4135663
Alignment:
| Q |
349 |
taggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtgggactcgaa |
448 |
Q |
| |
|
|||||| |||||||| | || ||| |||||||||| |||||| ||| ||| || ||||||||||| |||| ||||||| ||||||| || ||||| |
|
|
| T |
4135857 |
taggaacgaaagtgaggatatcaaggatattgttgaaaaagttacacatttgcttgacaagacagacctgttcattgctgaccatccagttagagtcgaa |
4135758 |
T |
|
| Q |
449 |
tctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaac |
543 |
Q |
| |
|
|||||||||| ||||||||||||| | || |||| | | || |||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
4135757 |
tctcgagtgctagatatgattcaactactggacactccattttcaaatgatgttctactactagggatgtggggtatggaaggtattggtaaaac |
4135663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 349 - 664
Target Start/End: Original strand, 4330175 - 4330493
Alignment:
| Q |
349 |
taggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtgggactcgaa |
448 |
Q |
| |
|
|||||||||||| |||| || |||||||||||||| || ||| ||| |||| || | |||| |||||| || ||||||||||||| |||| | | || |
|
|
| T |
4330175 |
taggaatgaaagagaagttatcaagaatattgttgaaaatgttacactttttcttgataagatagacttattcattgctgataatccggtggaaattaaa |
4330274 |
T |
|
| Q |
449 |
tctcgagtgcaagatatgattcaattgctagaca-tc--caacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaacta |
545 |
Q |
| |
|
||||||||| |||| ||||||||| | ||||||| || |||||||| |||||||||||||| ||| ||||||||| | ||| || || || |||| | |
|
|
| T |
4330275 |
tctcgagtgtaagagatgattcaacttctagacactcatcaacaatcaaatgatgttctactcttagagatgtgggggacgggtggaatcggcaaaatca |
4330374 |
T |
|
| Q |
546 |
ccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaatattagggaagtttgggggcaacctgctggacaagt |
645 |
Q |
| |
|
|| | || || | |||| || ||||| || || |||||||||||||||||||| || | ||||||||||| ||||||| |||| | || ||||||| |
|
|
| T |
4330375 |
ccattgcaaaggccatttataataaaattggccgcaattttgaaggtaggagctttcttgcaaatattagggaggtttgggagcaagtttctagacaagt |
4330474 |
T |
|
| Q |
646 |
ggatttacaacaacaactt |
664 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
4330475 |
ctatttacaagaacaactt |
4330493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 405 - 481
Target Start/End: Original strand, 25567668 - 25567744
Alignment:
| Q |
405 |
acaagacagacttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagac |
481 |
Q |
| |
|
|||||||| ||||| |||||||| |||||||||||||| | ||| |||||||| || ||||||||||| |||||||| |
|
|
| T |
25567668 |
acaagacacacttgcttgttgctaataatccagtgggagttgaacctcgagtggaaaatatgattcaactgctagac |
25567744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 468 - 543
Target Start/End: Original strand, 25567811 - 25567886
Alignment:
| Q |
468 |
ttcaattgctagacatccaacaatctaatgatgttctactgatagggatgtggggtatgggaggtattggtaaaac |
543 |
Q |
| |
|
|||||||| ||||| |||| |||| || ||||||||||| |||||||||||||||||||||| ||||| ||||| |
|
|
| T |
25567811 |
ttcaattgatagactaccaagaatcaaaagatgttctacttctagggatgtggggtatgggagggattggcaaaac |
25567886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 405 - 543
Target Start/End: Complemental strand, 10922 - 10784
Alignment:
| Q |
405 |
acaagacagacttgtttgttgctgataatccagtgggactcgaatctcgagtgcaagatatgattcaattgctagacatccaacaatctaatgatgttct |
504 |
Q |
| |
|
||||||||||||| || |||| ||||||||| |||||| || ||||||||||| | | | ||||| |||||| | || |||||||| ||||||||||| |
|
|
| T |
10922 |
acaagacagacttattcgttgttgataatccggtgggagtcaaatctcgagtggacaaaacgattccgttgctaaaaattcaacaatcaaatgatgttct |
10823 |
T |
|
| Q |
505 |
actgatagggatgtggggtatgggaggtattggtaaaac |
543 |
Q |
| |
|
|| ||||||| ||||||||||| || ||||||||||| |
|
|
| T |
10822 |
gctactagggatttggggtatggggggaattggtaaaac |
10784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 8e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 510 - 683
Target Start/End: Complemental strand, 22586467 - 22586294
Alignment:
| Q |
510 |
tagggatgtggggtatgggaggtattggtaaaactaccttagccaaagatattttcaacaaaatcggtcgtaattttgaaggtaggagcttcattcccaa |
609 |
Q |
| |
|
||||||||||||||||||| || |||| ||||| ||| | || |||| | ||| ||| || || || || | |||||||||||||||||| || | || |
|
|
| T |
22586467 |
tagggatgtggggtatggggggatttggcaaaacaaccattgcaaaagctgtttacaataagattggccgcgagtttgaaggtaggagcttccttgcaaa |
22586368 |
T |
|
| Q |
610 |
tattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaag |
683 |
Q |
| |
|
|||||||||||||||| |||| || | ||||| ||| ||||||| |||||||| |||||||||||| ||||| |
|
|
| T |
22586367 |
tattagggaagtttggaagcaagatggtagacaaatggttttacaagaacaacttttatctgatatctgtaaag |
22586294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 608 - 741
Target Start/End: Complemental strand, 36215946 - 36215813
Alignment:
| Q |
608 |
aatattagggaagtttgggggcaacctgctggacaagtggatttacaacaacaacttctatctgatatctttaaaggaacgtcgaccaagatacaaagta |
707 |
Q |
| |
|
|||| |||||| ||||||| | || || |||||||||| |||||||||||||||||| | |||||| | |||| |||| | ||||| |||||||||| |
|
|
| T |
36215946 |
aatactagggaggtttgggagaaaaatgttggacaagtgtctttacaacaacaacttctctttgatatttgcaaagaaacgacaaccaaaatacaaagta |
36215847 |
T |
|
| Q |
708 |
ttgattcaggaaaagtaatattaaaggatagact |
741 |
Q |
| |
|
|||| |||||||| | |||||||| |||||||| |
|
|
| T |
36215846 |
ttgaggcaggaaaaattatattaaaagatagact |
36215813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 343 - 471
Target Start/End: Complemental strand, 48015624 - 48015496
Alignment:
| Q |
343 |
tttttgtaggaatgaaagtgaagcgattaagaatattgttgacaaagtttcacgttttattaacaagacagacttgtttgttgctgataatccagtggga |
442 |
Q |
| |
|
|||||||||||||||||| || | ||||| |||||||||| || || |||| || || ||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
48015624 |
tttttgtaggaatgaaagcgaggttattaaagatattgttgaaaatattacacgattgcttgacaagacagacttgtttattgctaataattcagtgggg |
48015525 |
T |
|
| Q |
443 |
ctcgaatctcgagtgcaagatatgattca |
471 |
Q |
| |
|
| |||||| |||||| |||||||||||| |
|
|
| T |
48015524 |
attgaatcttgagtgcgagatatgattca |
48015496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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