View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19734_low_12 (Length: 239)
Name: NF19734_low_12
Description: NF19734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19734_low_12 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 118; Significance: 2e-60; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 11987582 - 11987711
Alignment:
| Q |
18 |
accaccggcaacgggaacttcaactgcgaattcagcatagatgaaagctgaaagaagagctgagaatcctgaagcagcgtaggagaggataatggaagga |
117 |
Q |
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| T |
11987582 |
accaccggcaacgggaacttcaactgcgaattcagcatagatgaaagctgaaagaagagctgagaatcctgaagcggcgtaggagaggataatggaagga |
11987681 |
T |
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| Q |
118 |
ccggcaacagaacgagcttcatgaccggta |
147 |
Q |
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| T |
11987682 |
ccagcaacagaacgagcttcctgaccggta |
11987711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 21597819 - 21598039
Alignment:
| Q |
19 |
ccaccggcaacgggaacttcaactgcgaattcagcatagatgaaagctgaaagaagagctgagaatcctgaagcagcgtaggagaggataatggaaggac |
118 |
Q |
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| T |
21597819 |
ccaccagcaacaggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggac |
21597918 |
T |
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| Q |
119 |
cggcaacagaacgagcttcatgaccggtaataacgaagataccggaactgaggatggcgcggaaagcgagccaggtgaggtcccaccaagtgaggcaacg |
218 |
Q |
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| T |
21597919 |
cagcatcgaaacgagcttcttgaccggtaacgacgaagataccagagccaacgacagcgccgaaagcgagccatgttaagtcccaccaagtgagacaacg |
21598018 |
T |
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| Q |
219 |
agacatgagattttcactggc |
239 |
Q |
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| T |
21598019 |
agtcattgtattttcactggc |
21598039 |
T |
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