View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19734_low_14 (Length: 211)
Name: NF19734_low_14
Description: NF19734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19734_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 3e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 6070424 - 6070606
Alignment:
| Q |
20 |
aaatctcagatgaataacatttagttgatgaatcaaccaattgttggagtcttaatgaccttattagattgatcaacatacaatcgaactctttgggtgt |
119 |
Q |
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| T |
6070424 |
aaatctcatttgaacaatatttagttgatgaatcaaccaattgttggagtcttaatgagcttattagattgatcaacatacaatcgaactctttgggtgt |
6070523 |
T |
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| Q |
120 |
tataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgct |
202 |
Q |
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| T |
6070524 |
tataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgct |
6070606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 6055961 - 6055812
Alignment:
| Q |
38 |
atttagttgatgaatcaaccaattgttggagtcttaatgaccttattagattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaa |
137 |
Q |
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| T |
6055961 |
atttagttgatgaatcaaccaattgttggagtcttaatgagcttattagattgatcaacatacaatcgaactctcttg-------aacctg--------a |
6055877 |
T |
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| Q |
138 |
aatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgct |
202 |
Q |
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| T |
6055876 |
aatagccaggtggcaccactcgaatttcaactccatgcatctcttcctttattttcctctctgct |
6055812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 38 - 202
Target Start/End: Original strand, 6085518 - 6085682
Alignment:
| Q |
38 |
atttagttgatgaatcaaccaattgttggagtcttaatgaccttattagattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaa |
137 |
Q |
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| T |
6085518 |
atttagttgatgaatcaaccaattattggagtcctaatgaccttattagattcatcaacatacaatcgaactctcttgaacctgaaatcagcagtaacaa |
6085617 |
T |
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| Q |
138 |
aatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgct |
202 |
Q |
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| | |||| ||||||||| |||||||||||||| || |||||||||||||| ||||||||| |
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| T |
6085618 |
atgaatcagggggcaccacttgaatttcaactccagatatatcttcctttatttttctctctgct |
6085682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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