View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19734_low_2 (Length: 633)
Name: NF19734_low_2
Description: NF19734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19734_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 10400291 - 10400521
Alignment:
| Q |
1 |
ttgctagatttaattaacagttctggcaaagcatacatgagtcatggtgaggttgaaggatcttttgtgattagatgtgctattggtgctaccttaacag |
100 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10400291 |
ttgctagatttaattaatagttctggcaaagcatacatgagtcatggtgaggttgaaggatcttttgtgattagatgtgctattggtgctaccttaacag |
10400390 |
T |
|
| Q |
101 |
aagaacatcatgtgactatgacatggaaattggtgcaacaacttgcaagttttctattaggtactcctctcaactaatgtataatatagttgagagggtt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10400391 |
aagaacatcatgtgactatgacatggaaattggtgcaacaaattgcaagttttctattaggtactcctctcaactaatgtataatatagttgagagggtt |
10400490 |
T |
|
| Q |
201 |
tcacctcagaataattatcaaagattgatgt |
231 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
10400491 |
tcacctcagaataattatcaaagattgatgt |
10400521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 205 - 417
Target Start/End: Original strand, 10400600 - 10400812
Alignment:
| Q |
205 |
ctcagaataattatcaaagattgatgtcatagaactatggaaatgtacgtcactttatttgtaaaatatatacaaagcaatcatcaattatctataagga |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10400600 |
ctcagaataattatcaaagattgatgtcatagaactatggaaatgtacgtcactttatttgtaaaatatatacaaagcaatcatcaattatctataagga |
10400699 |
T |
|
| Q |
305 |
ttgaaaacctttagtttctataacattttattcattgcatttgaaataaggatcgtgccactggtttctaggtttcctccaacattcctagaggacggca |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10400700 |
ttgaaaacctttagtttctataacattttattcattgcatttgaaataaggatcgtgccactggtttctaggattcctccaacattcctagaggacggca |
10400799 |
T |
|
| Q |
405 |
acaaaaacaaaaa |
417 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10400800 |
acaaaaacaaaaa |
10400812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 491 - 616
Target Start/End: Original strand, 10400889 - 10401014
Alignment:
| Q |
491 |
aacaaaaggaaaattgacatattaacgaggaagaaattcggttatagacaagtcgttgaacgtcaaaggtgtgcaagtattgatagactgactagaactt |
590 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10400889 |
aacaaaaggaaaattgacatattaacgaggaagaaattcggttatagacaagtcgttgaacgtcaaaggtgtgcaagtattgatagactgactagaactt |
10400988 |
T |
|
| Q |
591 |
gaatcttgtggaatcccttttgtatc |
616 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
10400989 |
gaatcttgtggaatcccttttgtatc |
10401014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 494
Target Start/End: Original strand, 10400801 - 10400838
Alignment:
| Q |
457 |
caaagacaaaaattgaatttgagatcttaagagtaaca |
494 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
10400801 |
caaaaacaaaaattgaatttgagatcttaagaggaaca |
10400838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 7e-26; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 516 - 612
Target Start/End: Complemental strand, 20234074 - 20233978
Alignment:
| Q |
516 |
cgaggaagaaattcggttatagacaagtcgttgaacgtcaaaggtgtgcaagtattgatagactgactagaacttgaatcttgtggaatcccttttg |
612 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| ||||||||||||| ||||||| || ||| |||| ||||||||||||||||||||| |||||| |
|
|
| T |
20234074 |
cgaggaagaacttcggttatagaaaagtcgttgatcgtcaaaggtgtggaagtatttatcgaccgacttgaacttgaatcttgtggaatctcttttg |
20233978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 516 - 612
Target Start/End: Complemental strand, 22128058 - 22127962
Alignment:
| Q |
516 |
cgaggaagaaattcggttatagacaagtcgttgaacgtcaaaggtgtgcaagtattgatagactgactagaacttgaatcttgtggaatcccttttg |
612 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||| ||||||||||||| ||||||| || ||| |||| ||||||||||||||||||||| |||||| |
|
|
| T |
22128058 |
cgaggaagaacttcggttatagaaaagtcgttgatcgtcaaaggtgtggaagtatttatcgaccgacttgaacttgaatcttgtggaatctcttttg |
22127962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 11005453 - 11005520
Alignment:
| Q |
34 |
tacatgagtcatggtgaggttgaaggatcttttgtgattagatgtgctattggtgctaccttaacaga |
101 |
Q |
| |
|
||||||| ||||| || |||||||||| |||||||||||| ||||||||||| || || |||||||| |
|
|
| T |
11005453 |
tacatgactcatgctgtggttgaaggagtttttgtgattaggtgtgctattggagcaactttaacaga |
11005520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 34 - 101
Target Start/End: Original strand, 11015781 - 11015848
Alignment:
| Q |
34 |
tacatgagtcatggtgaggttgaaggatcttttgtgattagatgtgctattggtgctaccttaacaga |
101 |
Q |
| |
|
||||||| ||||| || |||||||||| |||||||||||| ||||||||||| || || |||||||| |
|
|
| T |
11015781 |
tacatgactcatgctgtggttgaaggagtttttgtgattaggtgtgctattggagcaactttaacaga |
11015848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 21198796 - 21198868
Alignment:
| Q |
34 |
tacatgagtcatggtgaggttgaaggatcttttgtgattagatgtgctattggtgctaccttaacagaagaac |
106 |
Q |
| |
|
||||||| |||| || |||||||||| |||||||||||| ||||||||||| || || |||||||| |||| |
|
|
| T |
21198796 |
tacatgacgcatgctgtggttgaaggagtttttgtgattaggtgtgctattggagcaactttaacagaggaac |
21198868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University