View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19734_low_3 (Length: 623)
Name: NF19734_low_3
Description: NF19734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19734_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 390; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 468
Target Start/End: Complemental strand, 40844686 - 40844229
Alignment:
| Q |
17 |
ccatgatgaacgtccagcaagttcagcagtcctagtaagtattt-tcctttcggttccataagcatatgagagatgcatgtttctatctttacttttcaa |
115 |
Q |
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| T |
40844686 |
ccatgatgaacgtccagcaagttcagcagtcctagtaagtatttgtcctttcggttccataagcatatgagagatacatgtttctatctttacttttcaa |
40844587 |
T |
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| Q |
116 |
cacaaatatcacaagcacatggttatacccacagcaaaagaaatcgacatatcttatacagtgaaagaaatctgtatattttaaattggctattctacac |
215 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40844586 |
cacaaatatcacaagcacatggttatacccacagtaaaagaaatcgacatatcttatacagtgaaagaaatctgtatattttaaattggctattctacac |
40844487 |
T |
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| Q |
216 |
ttgcatctatcattcctacaaggtagtttacatatatttcaactgaaatgtatatttaaatttaaacaaatcaaagtgaaaggatccaatag-----nnn |
310 |
Q |
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| T |
40844486 |
ttgcatctatcattcctacaaggtagtttacatatatttcaactgaaatgtatatttaaatttaaacaaatcaaagtgaaaggatccaatagaaaaaaaa |
40844387 |
T |
|
| Q |
311 |
nnnnntgacaaaattatgaacatatgagagtgagactaatcataagcccaatcatctccattaaatcaggaaaaacaaattcctcttgacttttggtatt |
410 |
Q |
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| T |
40844386 |
aaaaatgacaaaattatgaacatatgagagtgagactaatcataagcccaatcatctccattaaatcaggaaaaacaaattcctcttgacttttggtatt |
40844287 |
T |
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| Q |
411 |
gcagaatgaattaagttagcatttaattaaagtaaatgctaacgcttaatgttcaaga |
468 |
Q |
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| T |
40844286 |
gcagaatgaattaagttagcatttaactaaagtaaatgctaacgcttaatgtgcaaga |
40844229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 486 - 518
Target Start/End: Complemental strand, 40844202 - 40844170
Alignment:
| Q |
486 |
atcaataatgtgcaagacttgtttctgtaaaaa |
518 |
Q |
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| T |
40844202 |
atcaataatgtgcaagacttgtttctgtaaaaa |
40844170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 393 - 449
Target Start/End: Original strand, 46501640 - 46501696
Alignment:
| Q |
393 |
ctcttgacttttggtattgcagaatgaattaagttagcatttaattaaagtaaatgc |
449 |
Q |
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| T |
46501640 |
ctcttcacttttggtattgtagaatgaattaaattggcatttaatcagagtaaatgc |
46501696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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