View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19734_low_5 (Length: 476)
Name: NF19734_low_5
Description: NF19734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19734_low_5 |
 | |
|
| [»] chr1 (4 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 418; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 476
Target Start/End: Complemental strand, 17408391 - 17407935
Alignment:
| Q |
17 |
acataacagctacctcataagttgattttccgaatatttccctcggtaagacatgaacctattaatcaaaaatcacaaaaaataaagatggtcacaatct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17408391 |
acataacagctacctcataagttgattttccgaatatttccctcggtaacacatgaacctattaatcaaaaatcacaaaaaataaagatggtcacaatct |
17408292 |
T |
|
| Q |
117 |
atacacgtaaaaatgcaaagtatgaatcaagattaacataattaatcaaagtaattaatttttgtttaagtactcaccgagcttcgaacgaccattgatg |
216 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
17408291 |
atacacataaaaatgcaaacaatgaatcaagattaacat---taatcaaagtaattaatttttgtttaagtactcaccgaacttcgaacaaccattgatg |
17408195 |
T |
|
| Q |
217 |
gatttgcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttccactataattcacaccagattt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17408194 |
gatttgcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttccactataattcacaccagattt |
17408095 |
T |
|
| Q |
317 |
atagtcacaagcatgcataacatttccaccaaaatcactcaaaccttcaaattccggcacaactttctccgagttttcaccggtagcaaccacaagccac |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17408094 |
atagtcacaagcatgcataacatttccaccaaaatcactcaaaccttcaaattccggcacaactttctccgagttttcaccggtagcaaccacaagccac |
17407995 |
T |
|
| Q |
417 |
ctacaaatatattcaacttcaacaactttatcactttttatcctattgctcttaatcctc |
476 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17407994 |
ctacaaatatactcaacttcaacaactttatcactttttatcctattgctcttaatcctc |
17407935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 221 - 336
Target Start/End: Original strand, 29857465 - 29857580
Alignment:
| Q |
221 |
tgcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttccactataattcacaccagatttatag |
320 |
Q |
| |
|
||||||||| || |||||||||||||||| |||||| |||||||| ||||| |||||||| | ||| || || || ||| || | |||| |||||||| |
|
|
| T |
29857465 |
tgcattatgattgcaaagatcaagagaaagttccattccagaattaccacaaccaacaaccaaaactttcttccctctaaaactttcacctgatttataa |
29857564 |
T |
|
| Q |
321 |
tcacaagcatgcataa |
336 |
Q |
| |
|
||||||||||| |||| |
|
|
| T |
29857565 |
tcacaagcatgaataa |
29857580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 29857640 - 29857684
Alignment:
| Q |
393 |
tcaccggtagcaaccacaagccacctacaaatatattcaacttca |
437 |
Q |
| |
|
||||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
29857640 |
tcaccagtagcaaccacaagcgacctacaaatatactcaacttca |
29857684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 280
Target Start/End: Original strand, 888402 - 888460
Alignment:
| Q |
222 |
gcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaac |
280 |
Q |
| |
|
|||| ||| ||||||||||| | | |||||||||| || |||||||||||||||||||| |
|
|
| T |
888402 |
gcatcatgattacaaagatccaaacaaacttccatacctgaatttccacatccaacaac |
888460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 295
Target Start/End: Original strand, 39733423 - 39733482
Alignment:
| Q |
236 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
295 |
Q |
| |
|
||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
39733423 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
39733482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 437
Target Start/End: Original strand, 39733577 - 39733624
Alignment:
| Q |
390 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
437 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
39733577 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39733624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 390 - 437
Target Start/End: Complemental strand, 39839381 - 39839334
Alignment:
| Q |
390 |
ttttcaccggtagcaaccacaagccacctacaaatatattcaacttca |
437 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
39839381 |
ttttcgccggtagcaacaacaagccacctacaaatatactcaacttca |
39839334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 236 - 295
Target Start/End: Complemental strand, 39839535 - 39839476
Alignment:
| Q |
236 |
aagatcaagagaaacttccatgccagaatttccacatccaacaacaagaacattttttcc |
295 |
Q |
| |
|
||||||||| || | |||||| ||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
39839535 |
aagatcaagtgagagttccattccagaatttccacatccaacaacaagaactttctttcc |
39839476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 222 - 280
Target Start/End: Complemental strand, 50667920 - 50667862
Alignment:
| Q |
222 |
gcattatggttacaaagatcaagagaaacttccatgccagaatttccacatccaacaac |
280 |
Q |
| |
|
|||| ||||||||||||||| | | |||||||||| |||||||| ||||| |||||||| |
|
|
| T |
50667920 |
gcatcatggttacaaagatctaaacaaacttccataccagaattaccacaaccaacaac |
50667862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University