View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19734_low_6 (Length: 448)
Name: NF19734_low_6
Description: NF19734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19734_low_6 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 133 - 400
Target Start/End: Complemental strand, 12064056 - 12063792
Alignment:
| Q |
133 |
ttcaaagaattgatgtatgtcaaccatcttatgatccaataattgagattattttcagacaactgcttatataagattacttttccaacgtagcaaattc |
232 |
Q |
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|||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
12064056 |
ttcaaaaaattgatgtatgtccaccatctaatgatccaataattgagattattttcagacaactgctcatataagattacttttccaacgcagcaaattc |
12063957 |
T |
|
| Q |
233 |
tttacaatcaacctcataagcattcttaaattgatatttagaaatctcataattgaattgaaacaaagttgagnnnnnnngtggcggagatcataaagat |
332 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12063956 |
tttacaatcaacctcataagcattcttaaattgatatttagaaatctcataattgaattgaaacaaagttgagaaaaaaagtggcggagatcataaagaa |
12063857 |
T |
|
| Q |
333 |
tagtggtatataaaagtaattggctcaatatttaactatgagattgttcgctttttcaatatgatttc |
400 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
12063856 |
tagtggtatataaaag---ttggctcaatatttaactatgagattgttcgctttttcaatataatttc |
12063792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 12058621 - 12058330
Alignment:
| Q |
20 |
aaagccatatttacactgtctactttcacacctcacttggtagttttgtagtaacatatcagtgctacttacttgcgatgctctatgatcaattgtactg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
12058621 |
aaagccatatttacactgtctactttcacacctcacttggtagttttgtagtaacatatcagtgctacttacttgcaatgctctatgatcgattgtactg |
12058522 |
T |
|
| Q |
120 |
tggcctctagtaattcaaagaattgatgtatgtcaaccatcttatgatccaataattgagattattttcagacaactgcttatataagattacttttcca |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||| |||||||||||| ||||||||| |
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| T |
12058521 |
tggcctctagtatttcaaagaattgatgtatgtcaaccatattatgatccaataattgatatttttttcagacaactacttatataagatcacttttcca |
12058422 |
T |
|
| Q |
220 |
acgtagcaaattctttacaatcaacct--------------cataagcattcttaaattgatatttagaaatctcataattgaattgaaaca |
297 |
Q |
| |
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|||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||||| |
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| T |
12058421 |
gcgtagcaaattctttataatcaacctcacattataagttacataagcattcataaattgatatttagaaatatcataattgaactgaaaca |
12058330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 20 - 400
Target Start/End: Complemental strand, 12074272 - 12073874
Alignment:
| Q |
20 |
aaagccatatttacactgtctactttcacacctcacttggtagttttgtagtaacatatcagtgctacttactt-------gcgatgctctatgatc-aa |
111 |
Q |
| |
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|||||||||||| ||| |||||||||||||| ||||||| | || |||||||||||||||| |||||||||| || ||| ||||||||| || |
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| T |
12074272 |
aaagccatatttttactctctactttcacacc-cacttggcactt--gtagtaacatatcagtactacttacttccaaattgcaatgttctatgatcgaa |
12074176 |
T |
|
| Q |
112 |
ttgtactgtggcctctagtaattcaaagaattgatgtatgtcaaccatcttatgatccaataattgagattattttcagacaactgcttatataagatta |
211 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |
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| T |
12074175 |
ttgtactgtggcctctagtaattcaaagaattgatgtatgtccaccatcttatgatccaataattaagattattttcagacaactacttatataagatca |
12074076 |
T |
|
| Q |
212 |
cttttccaacgtagcaaattctttacaatcaacct--------------cataagcattcttaaattgatatttagaaatctcataattgaattgaaaca |
297 |
Q |
| |
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||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
12074075 |
cttttccaacgtagcaaattctttataatcaacatcacattataagttacataagcattcttaaattgatatttagaaataccataattgaactgaaaca |
12073976 |
T |
|
| Q |
298 |
aagttgagnnnnnnngtggcggagatcataaagattagtggtatataaaagtaattggctcaatatttaac--tatgagattgttcgctttttcaatatg |
395 |
Q |
| |
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||||||| || || ||| |||||||| |||||||||||||||| |||||||||| |||||| | ||||||||||| ||||||||||||| |
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| T |
12073975 |
aagttgaagaaaaaagttgcaaagaccataaagaatagtggtatataaaag---ttggctcaatttttaactgtgtgagattgttcactttttcaatatg |
12073879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 110 - 400
Target Start/End: Complemental strand, 12051219 - 12050917
Alignment:
| Q |
110 |
aattgtactgtggcctctagtaattcaaagaattgatgtatgtcaaccatcttatgatccaataattgagattattttcagacaactgcttatataagat |
209 |
Q |
| |
|
||||||| ||||| |||||||| |||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||| | ||| |||||||| |
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| T |
12051219 |
aattgtattgtggtctctagtatttcaaagaattgatatatgtccaccatcttatgatccaataattgatattattttcagacaattacttgtataagat |
12051120 |
T |
|
| Q |
210 |
tacttttccaacgtagcaaattctttacaatcaacct--------------cataagcattcttaaattgatatttagaaatctcataattgaattgaaa |
295 |
Q |
| |
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| ||||||||||||| ||| |||||| ||||||||| |||||||||||||||| |||||||||||||| ||||||||||| || || |
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| T |
12051119 |
caattttccaacgtag-aaaatctttataatcaacctcacattataagttacataagcattcttaaaatgatatttagaaatatcataattgaactgcaa |
12051021 |
T |
|
| Q |
296 |
caaagttgagnnnnnnngtggcggagatcataaagattagtggtatataaaagtaattggctcaatatttaac--tatgagattgttcgctttttcaata |
393 |
Q |
| |
|
|||||||||| ||||| |||| |||||||| |||| ||||||||||| |||||||| | |||||| | ||||||||||| ||||||||||| |
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| T |
12051020 |
caaagttgaggaaaaacgtggcagagaccataaagaatagtagtatataaaag---ttggctcattttttaactgtgtgagattgttcactttttcaata |
12050924 |
T |
|
| Q |
394 |
tgatttc |
400 |
Q |
| |
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||||||| |
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| T |
12050923 |
tgatttc |
12050917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 12066637 - 12066467
Alignment:
| Q |
149 |
atgtcaaccatcttatgatccaataattgagattattttcagacaactgcttatataagattacttttccaacgtagcaaattctttacaatcaacct-- |
246 |
Q |
| |
|
||||| ||| ||||||| |||||||||||||||||||||||||||||| ||| |||||||| | |||||||||||||||||||||||| ||||||||| |
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|
| T |
12066637 |
atgtccaccctcttatgttccaataattgagattattttcagacaactacttgtataagatcaattttccaacgtagcaaattctttataatcaacctca |
12066538 |
T |
|
| Q |
247 |
------------cataagcattcttaaattgatatttagaaatctcataattgaattgaaacaaagttgag |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12066537 |
tattataagttacataagcattcttaaattgatatttagaaatatcataattgaattgaaacaaagttgag |
12066467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 155 - 400
Target Start/End: Complemental strand, 12046928 - 12046675
Alignment:
| Q |
155 |
accatcttatgatccaataattgagattattttcagacaactgcttatataagattacttttccaacgtagcaaattctttacaatcaacctcata---- |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| ||||||||||||| |
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| T |
12046928 |
accatcttatgatccaataattgagattattttcagacaactgcctatataagatcacttttccaacgt-----attctttataatcaacctcatattat |
12046834 |
T |
|
| Q |
251 |
----------agcattcttaaattgatatttagaaatctcataattgaattgaaacaaagttgagnnnnnnngtggcggagatcataaagattagtggta |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||||| |||||| ||||| ||| |||||||| |||| ||| |
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|
| T |
12046833 |
aagttacatgagcattcttaaattgatatttagaaatctcataatttaactgaaacagggttgaggaaaaaagtggcaaagaccataaagaatagtagta |
12046734 |
T |
|
| Q |
341 |
tataaaagtaattggctcaatatttaac--tatgagattgttcgctttttcaatatgatttc |
400 |
Q |
| |
|
|||||||| ||| |||||| |||||| | ||||||||||| |||||||||||||||||| |
|
|
| T |
12046733 |
tataaaag---ttgactcaatttttaactgtgtgagattgttcactttttcaatatgatttc |
12046675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 171 - 400
Target Start/End: Complemental strand, 12053686 - 12053445
Alignment:
| Q |
171 |
ataattgagattattttcagacaactgcttatataagattacttttccaacgtagcaaattctttacaatcaacctca--------------taagcatt |
256 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||| |||||| |||| |||||||||||||| ||||||||||| |||||||| |
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|
| T |
12053686 |
ataattgagattattttcagacaactacttgcataagatcactttttcaacttagcaaattctttataatcaacctcacattatatgttacataagcatt |
12053587 |
T |
|
| Q |
257 |
cttaaattgatatttagaaatctcataattgaattgaaacaaagttgagnnnnnnngtggcggagatcataaagattagtggtatataaaagtaattggc |
356 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||| |||||| ||||||||||| ||||||| |||| ||||||||| ||| | |
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|
| T |
12053586 |
cttaaattgatatttagaaatctcataattaaactgaaacaaggttgaggaaaaaagtggcggagat-ataaagaatagtaccatataaaag---ttgac |
12053491 |
T |
|
| Q |
357 |
tcaatatttaac--tatgagattgttcgctttttcaatatgatttc |
400 |
Q |
| |
|
||||| |||||| | |||||||||| |||||||||||||||||| |
|
|
| T |
12053490 |
tcaatttttaactgtgtgagattgtttactttttcaatatgatttc |
12053445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 73 - 136
Target Start/End: Complemental strand, 12075455 - 12075392
Alignment:
| Q |
73 |
acatatcagtgctacttacttgcgatgctctatgatcaattgtactgtggcctctagtaattca |
136 |
Q |
| |
|
|||||||||| |||||||||||| ||| ||||||||| ||||||| ||||||||||||| |||| |
|
|
| T |
12075455 |
acatatcagtactacttacttgcaatggtctatgatcgattgtaccgtggcctctagtatttca |
12075392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 79
Target Start/End: Complemental strand, 12046991 - 12046932
Alignment:
| Q |
20 |
aaagccatatttacactgtctactttcacacctcacttggtagttttgtagtaacatatc |
79 |
Q |
| |
|
|||||||| |||| ||| |||||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
12046991 |
aaagccatttttatactatctactttcacacctctcttggcagttttgtcgtaacatatc |
12046932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 93
Target Start/End: Complemental strand, 12053805 - 12053734
Alignment:
| Q |
20 |
aaagccatatttacactgtctactttcacacctcacttggtagttttgtagtaacatatcagtgctacttactt |
93 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| | || |||||| |||||||| |||||||||| |
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|
| T |
12053805 |
aaagccatatttatactctctactttcacacctcacttggca--cttctagtaagatatcagtcctacttactt |
12053734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 397 - 431
Target Start/End: Complemental strand, 12062507 - 12062473
Alignment:
| Q |
397 |
tttccatatcctctctcttcattaacgtcgaccct |
431 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
12062507 |
tttccatatcctctctcttcattaacgtcgaccct |
12062473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 247 - 400
Target Start/End: Original strand, 30353563 - 30353714
Alignment:
| Q |
247 |
cataagcattcttaaattgatatttagaaatct-cataattgaattgaaacaaagttgagnnnnnnngtggcggagatcataaagattagtggtatataa |
345 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| | ||||||| ||||||| |||||| ||||| |||| |||||||| ||||| ||||||| |
|
|
| T |
30353563 |
cataagaattcttaaattgatatttagaaatctaaaaaattgaactgaaacagggttgaggagacaagtggcagagaccataaagaatagtgatatataa |
30353662 |
T |
|
| Q |
346 |
aagtaattggctcaatatttaactatgagattgttcgctttttcaatatgatttc |
400 |
Q |
| |
|
| | |||||||||| |||||||||| |||||||| | |||||||||| ||||| |
|
|
| T |
30353663 |
agg---ttggctcaatttttaactatgggattgttcaccttttcaatataatttc |
30353714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 160
Target Start/End: Original strand, 1139 - 1199
Alignment:
| Q |
101 |
tctatgatc-aattgtactgtggcctctagtaattcaaagaattgatgtatgtcaaccatc |
160 |
Q |
| |
|
||||||||| ||||| || ||||| |||| || ||||||||||||||||||||| |||||| |
|
|
| T |
1139 |
tctatgatcgaattgcaccgtggcttctaatatttcaaagaattgatgtatgtccaccatc |
1199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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