View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19734_low_9 (Length: 301)
Name: NF19734_low_9
Description: NF19734
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19734_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 12064313 - 12064601
Alignment:
| Q |
1 |
aaagtcaaaaatttctttagaaa-cataaccttgatcattttctttttcgatttcatattagcttgttagcactctatctcaggataattattatgaaaa |
99 |
Q |
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| T |
12064313 |
aaagtcaaaaatttctttagacatcataaccttgatcattttcttttttgatttcatattagcttgttagcactctatctcaggataattattatgaaaa |
12064412 |
T |
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| Q |
100 |
agattatattatagataataatgtaatgtaacttgccaaaaaaccaattatttgtatggtccatcattaatacttatgagttatgtcttcgtcttgttct |
199 |
Q |
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| T |
12064413 |
agattatattatagataataatgtaatgtaacttgccaaaaaaccaattatttgtatggtccatcattaatacttatgagttatgtcttcgtcttgttct |
12064512 |
T |
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| Q |
200 |
tggttggttattctggattcactagcttcgttagattttcttcttagaggcggaatctatgatcaagacatggttggtgatgcttattc |
288 |
Q |
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| T |
12064513 |
tggttggttattctggattcactagcttcattatattttcttcttagagacggaatctatgatcaagacatggttggtgatgcttattc |
12064601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 52 - 288
Target Start/End: Original strand, 12058912 - 12059149
Alignment:
| Q |
52 |
ttcatattagcttgttagcactctatctcaggataattattatgaaaaaga-ttatattatagataataatgtaatgtaacttgccaaaaaaccaattat |
150 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
12058912 |
ttcaaattagcttgttagcactctatctcaagataattattatgaaaaaaaattatattatagataataatgtaatgtaacttaccaaaaaaccaattat |
12059011 |
T |
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| Q |
151 |
ttgtatggtccatcattaatacttatgagttatgtcttcgtcttgttcttggttggttattctggattcactagcttcgttagattttcttcttagaggc |
250 |
Q |
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| T |
12059012 |
tcgtgtggtccatcattaatactcatgagttatgtcttcatcttgttcttggttggttattctggattcactagtttcattatattttcttcttagagac |
12059111 |
T |
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| Q |
251 |
ggaatctatgatcaagacatggttggtgatgcttattc |
288 |
Q |
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| T |
12059112 |
ggaatctatgatcaagacatggttggtgatgcttattc |
12059149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 27 - 288
Target Start/End: Original strand, 12051469 - 12051717
Alignment:
| Q |
27 |
aaccttgatcattttctttttcgatttcatattagcttgttagcactctatctcaggataattattatgaaaaagattatattatagataataatgtaat |
126 |
Q |
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||||||||||||||||||||| | ||||| ||||||||||||||||||| ||||| |||||||||||| || ||||||| | ||||||||||||| |
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| T |
12051469 |
aaccttgatcattttcttttt-gttttcaaattagcttgttagcactctctctcaatataattattatgtaatagattatgt-----ataataatgtaat |
12051562 |
T |
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| Q |
127 |
gtaacttgccaaaaaaccaattatttgtatggtccatcattaatacttatgagttatgtcttcgtcttgttcttggttggttattctggattcactagct |
226 |
Q |
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| T |
12051563 |
ataacttgccaaaaaatcaattattcgtgtagtccatcattactacttatg-------tcttcatcttgttcttggttggttattctggattcaccagct |
12051655 |
T |
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| Q |
227 |
tcgttagattttcttcttagaggcggaatctatgatcaagacatggttggtgatgcttattc |
288 |
Q |
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| T |
12051656 |
tcattagattttcttcttagagacggaatctatgatcaagacatggttggtgatgcttattc |
12051717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 12047237 - 12047347
Alignment:
| Q |
1 |
aaagtcaaaaatttctttagaaa-cataaccttgatcattttctttttcgatttcatattagcttgttagcactctatctcaggataattattatgaaaa |
99 |
Q |
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|
||||||||||||||||||||| | |||||||||||| ||||||| ||| | ||||| |||||||||||||| |||||||||| |||| ||||| |||| |
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| T |
12047237 |
aaagtcaaaaatttctttagacatcataaccttgattattttctgttttgttttcaaattagcttgttagctctctatctcaagatatttattttgaagt |
12047336 |
T |
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| Q |
100 |
agattatatta |
110 |
Q |
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|||||| |||| |
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| T |
12047337 |
agattaaatta |
12047347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 211 - 287
Target Start/End: Complemental strand, 5573719 - 5573643
Alignment:
| Q |
211 |
tctggattcactagcttcgttagattttcttcttagaggcggaatctatgatcaagacatggttggtgatgcttatt |
287 |
Q |
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||||||||| ||||||| ||||| ||||||||||||| ||||||||| ||||| |||||||||||| | |||||| |
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| T |
5573719 |
tctggattctgtagcttcattagactttcttcttagagatggaatctataatcaaaacatggttggtggttcttatt |
5573643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 211 - 278
Target Start/End: Complemental strand, 5582994 - 5582927
Alignment:
| Q |
211 |
tctggattcactagcttcgttagattttcttcttagaggcggaatctatgatcaagacatggttggtg |
278 |
Q |
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|||||||| | ||||||| ||||||||||||||||||| ||| ||||| || ||||||||||||||| |
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| T |
5582994 |
tctggatttattagcttcattagattttcttcttagagatggattctataataaagacatggttggtg |
5582927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 194 - 243
Target Start/End: Original strand, 12047371 - 12047420
Alignment:
| Q |
194 |
tgttcttggttggttattctggattcactagcttcgttagattttcttct |
243 |
Q |
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|||||||||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
12047371 |
tgttcttggtgggtatttctggattcactagcttctttagattttcttct |
12047420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 278
Target Start/End: Complemental strand, 5593468 - 5593419
Alignment:
| Q |
229 |
gttagattttcttcttagaggcggaatctatgatcaagacatggttggtg |
278 |
Q |
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|||| ||||||||||||||| |||||||||||| ||| ||||||||||| |
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| T |
5593468 |
gttatattttcttcttagagatggaatctatgataaagccatggttggtg |
5593419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 12047418 - 12047451
Alignment:
| Q |
255 |
tctatgatcaagacatggttggtgatgcttattc |
288 |
Q |
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|||||||||||||||||||||||||||| ||||| |
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| T |
12047418 |
tctatgatcaagacatggttggtgatgcctattc |
12047451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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