View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19735_low_1 (Length: 568)
Name: NF19735_low_1
Description: NF19735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19735_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 12 - 552
Target Start/End: Original strand, 42154632 - 42155153
Alignment:
| Q |
12 |
agcagagaaatagtggagaaacaaggta-tcctattccctttcaatcttcaagaatttcctttagtcaattttgttattagtgatgcataatagtactat |
110 |
Q |
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| T |
42154632 |
agcagagaaatagtggagaaacaaggtaatcctattccctttcaatcttcaagaatttcctttagtcaattttgttattag------------------- |
42154712 |
T |
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| Q |
111 |
agtaattacaaataagtaatcacctatataaggtattaattaatcttctgagtatggttataaattataatggactagtaaagattgacaccatttcata |
210 |
Q |
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| T |
42154713 |
--taattacaaataagtaatcacctatataaggtattaattaatcttctgagtatggttataaattataatgggctagaaaagattgacaccatt-cata |
42154809 |
T |
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| Q |
211 |
tttttggtta-taaa--ttacaaaagaagaaaatttgtgcaccttgaattgactatgatatttagacaagaccaattgaattgctaaagatagaaaaata |
307 |
Q |
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| T |
42154810 |
tttttggtttgtgaacttttaaaaagaagaaaatttgtgcaccttgaattgactatgatatttagacaagaccaattgaattgctaaagatagaaaaata |
42154909 |
T |
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| Q |
308 |
ccaagtatcgagtaattataaaggtattgtaatttatctcataaatagagcttggaagaatcaaatactctagcataccttttctattcttatcagttca |
407 |
Q |
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| T |
42154910 |
ctaagtatcaagtaattataaaggtattgtaatttatctcataaatagagcttggaaga-tcaaatactctagcataccttttctattcttatctgttca |
42155008 |
T |
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| Q |
408 |
aagagtttacttttgtgacagacaagaatcttgtgcttgcaatctttccaatctaatttagaataaatcatgtgaaaaatgaaaagcctaagatggaagt |
507 |
Q |
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| T |
42155009 |
aggagtttacttttgtgacagacaagaatcttgtgcttgcaatctttccaatctaatttagaataaatcatgtgaaaaatgaaaagcctaagatggaagt |
42155108 |
T |
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| Q |
508 |
attaccaactttttcttttgaaaagttagtgccaacaaaagaaac |
552 |
Q |
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| T |
42155109 |
attaccaactttttcttttgaaaagttagtgccaacaaaagaaac |
42155153 |
T |
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