View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19735_low_2 (Length: 353)

Name: NF19735_low_2
Description: NF19735
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19735_low_2
NF19735_low_2
[»] chr2 (1 HSPs)
chr2 (19-344)||(42960684-42961009)
[»] chr5 (1 HSPs)
chr5 (166-332)||(35607889-35608055)
[»] chr8 (2 HSPs)
chr8 (245-322)||(11791979-11792056)
chr8 (257-322)||(29858345-29858410)
[»] chr6 (4 HSPs)
chr6 (255-322)||(7712361-7712428)
chr6 (256-318)||(10890479-10890538)
chr6 (268-330)||(473905-473967)
chr6 (256-321)||(12117149-12117214)
[»] chr7 (2 HSPs)
chr7 (257-330)||(3182435-3182508)
chr7 (255-314)||(37702076-37702135)
[»] chr3 (2 HSPs)
chr3 (246-322)||(13873370-13873445)
chr3 (256-309)||(32783461-32783514)
[»] chr4 (1 HSPs)
chr4 (255-314)||(56081265-56081324)
[»] chr1 (1 HSPs)
chr1 (246-301)||(2443403-2443458)


Alignment Details
Target: chr2 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 344
Target Start/End: Complemental strand, 42961009 - 42960684
Alignment:
Q  19 gtacttgacaacagatttgttgggaagggtatggctgataatccaatgaacacaatttttgttcctcttaagaaatcagttaaacaatcattgatagaaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42961009 gtacttgacaacagatttgttgggaagggtatggctgataatccaatgaacacaatttttgttcctcttaagaaatcagttaaacaatcattgatagaaa 42960910  T
Q  119 cagttggtattaccaataagggtgtgtatattgaagctagctgtggatttggacagaccaatgatagcattcattgccaccatggtttgctatcagctga 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960909 cagttggtattaccaataagggtgtgtatattgaagctagctgtggatttggacagaccaatgatagcattcattgccaccatggtttgctatcagctga 42960810  T
Q  219 ggtatgtcttcactcatcacctaatttgagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaa 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42960809 ggtatgtcttcactcatcacctaatttgagttttgttattttgacacacaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaa 42960710  T
Q  319 tatgcggctaatcaagtttagtatat 344  Q
    ||||||||||||||||||||||||||    
T  42960709 tatgcggctaatcaagtttagtatat 42960684  T

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Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 166 - 332
Target Start/End: Original strand, 35607889 - 35608055
Alignment:
Q  166 tttggacagaccaatgatagcattcattgccaccatggtttgctatcagctgaggtatgtcttcactcatcacctaatttgagttttgttattttgacac 265  Q
    ||||||||||||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||| | | ||||| ||||    
T  35607889 tttggacagaccaatgacagcattcattgccaccatggtttgttgtcagctgagatatgtcttcactcatcacctaatttgagttgtttaattttcacac 35607988  T
Q  266 aaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaatca 332  Q
    | ||| ||| ||||||||||| | |||||||||||||||||||||||||||||||||| | ||||||    
T  35607989 acaaaattgacattaaatttctagaacaaattagatggttaacatagttcaaatatgcagttaatca 35608055  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 245 - 322
Target Start/End: Original strand, 11791979 - 11792056
Alignment:
Q  245 tgagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 322  Q
    |||||| ||| ||||||||| || |||||| ||| ||||||||||||||||||||| |||||||| | |||| |||||    
T  11791979 tgagttgtgtgattttgacataagaatttgacatcaaatttcgacaacaaattagacggttaacacaattcacatatg 11792056  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 29858345 - 29858410
Alignment:
Q  257 ttttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 322  Q
    |||||| ||||||||||| ||| ||||||||||  ||| ||||| |||||||||| ||||||||||    
T  29858345 ttttgaaacaaaaatttgacatcaaatttcgacgtcaatttagaaggttaacataattcaaatatg 29858410  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 7712428 - 7712361
Alignment:
Q  255 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 322  Q
    ||||||||||||  ||||||  |  ||||||||||||||  |||||||||||||||||||||||||||    
T  7712428 tattttgacacacgaatttgataacaaatttcgacaacagtttagatggttaacatagttcaaatatg 7712361  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 10890538 - 10890479
Alignment:
Q  256 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaa 318  Q
    |||||||||||||  |||| |||||| ||||||||||||| ||||||||||||| ||||||||    
T  10890538 attttgacacaaa--tttgacattaa-tttcgacaacaaactagatggttaacagagttcaaa 10890479  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 330
Target Start/End: Complemental strand, 473967 - 473905
Alignment:
Q  268 aaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaat 330  Q
    ||||||| ||| ||||||| || |||||||||||| ||||||||||| | ||||| |||||||    
T  473967 aaatttgacatgaaatttcaaccacaaattagatgattaacatagtttacatatgtggctaat 473905  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 321
Target Start/End: Complemental strand, 12117214 - 12117149
Alignment:
Q  256 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatat 321  Q
    ||||||||||| ||||||| ||| ||| ||| ||||||| ||| ||||||||  ||||||||||||    
T  12117214 attttgacacacaaatttgacatcaaacttcaacaacaatttatatggttaatgtagttcaaatat 12117149  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 330
Target Start/End: Original strand, 3182435 - 3182508
Alignment:
Q  257 ttttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatgcggctaat 330  Q
    |||||| ||||||||||| ||  ||||||||||||| | ||||||||||||  ||||| ||||||| |||||||    
T  3182435 ttttgatacaaaaatttgacaacaaatttcgacaactatttagatggttaaggtagttaaaatatgtggctaat 3182508  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 37702135 - 37702076
Alignment:
Q  255 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagtt 314  Q
    |||||||| ||| ||||||||||| ||||||| |||||||||||||| ||| | ||||||    
T  37702135 tattttgaaacacaaatttgtcatcaaatttcaacaacaaattagatagttgatatagtt 37702076  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 322
Target Start/End: Original strand, 13873370 - 13873445
Alignment:
Q  246 gagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagttcaaatatg 322  Q
    ||||| ||||| ||||||||||||||| | ||||||| |||||||| ||| || || |||||||||||| |||||||    
T  13873370 gagttgtgttactttgacacaaaaatt-gacattaaaattcgacaaaaaactaaattgttaacatagtttaaatatg 13873445  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 32783514 - 32783461
Alignment:
Q  256 attttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaaca 309  Q
    ||||||||||| ||||||| | | ||||||| ||||||||||||| ||||||||    
T  32783514 attttgacacacaaatttgacttcaaatttcaacaacaaattagacggttaaca 32783461  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 56081324 - 56081265
Alignment:
Q  255 tattttgacacaaaaatttgtcattaaatttcgacaacaaattagatggttaacatagtt 314  Q
    |||||||||||||||||||| ||| ||| || |||||||| ||||||| |||||| ||||    
T  56081324 tattttgacacaaaaatttgacataaaaatttgacaacaatttagatgattaacacagtt 56081265  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 246 - 301
Target Start/End: Original strand, 2443403 - 2443458
Alignment:
Q  246 gagttttgttattttgacacaaaaatttgtcattaaatttcgacaacaaattagat 301  Q
    ||||| |||||||||||||||||||||   ||| ||||||||||| ||||||||||    
T  2443403 gagttgtgttattttgacacaaaaattcaacatcaaatttcgacaccaaattagat 2443458  T

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