View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19736_high_11 (Length: 249)

Name: NF19736_high_11
Description: NF19736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19736_high_11
NF19736_high_11
[»] chr3 (3 HSPs)
chr3 (1-233)||(52712570-52712802)
chr3 (1-233)||(52721391-52721623)
chr3 (2-210)||(52698774-52698982)


Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 52712802 - 52712570
Alignment:
Q  1 gtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaagaaacctagtaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52712802 gtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaagaaacctagtaaa 52712703  T
Q  101 agggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattccaaaaccccaa 200  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  52712702 agggcttcccattggcttttggaaacggtaataccgaacaccggcagctagaacaacgatagataaaaccgtagttattgtgggaattccaaaaccccaa 52712603  T
Q  201 ccccaccctagtttatcttgtgcataaaccaat 233  Q
    |||||||||||||||||||||||||||||||||    
T  52712602 ccccaccctagtttatcttgtgcataaaccaat 52712570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 52721623 - 52721391
Alignment:
Q  1 gtgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaagaaacctagtaaa 100  Q
    |||||||||||||||| ||||||||||| |||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||    
T  52721623 gtgtggtctcaacctcatagagagtaggttcattttctacggaaactccttttcgatgtttcttgacggaggctacaataacctgaagaaacctagtaaa 52721524  T
Q  101 agggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattccaaaaccccaa 200  Q
    |||||||||||||| |||||| |||||||||||||||||||| |||||||||| ||| |||||||||||| ||||||||||||| |||||||||||||||    
T  52721523 agggcttcccattggcttttgaaaacggtaataccgaacaccagcagctagaagaacgatagataaaaccatagttattgtgggtattccaaaaccccaa 52721424  T
Q  201 ccccaccctagtttatcttgtgcataaaccaat 233  Q
    |||||||||||||||||||||||||||||||||    
T  52721423 ccccaccctagtttatcttgtgcataaaccaat 52721391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 52698982 - 52698774
Alignment:
Q  2 tgtggtctcaacctcgtagagagtaggctcattttctacggagactcctctttgatgtttcttgacggaggctacaataacctgaagaaacctagtaaaa 101  Q
    |||||| |||||||| ||||||| ||  ||||||||||| |||||||||| | |||||||||| |  || |||||||||||||||||||||||||| ||     
T  52698982 tgtggtttcaacctcatagagaggagtttcattttctactgagactcctcctcgatgtttctttatagaagctacaataacctgaagaaacctagtgaat 52698883  T
Q  102 gggcttcccattgccttttggaaacggtaataccgaacaccggcagctagaacaacaatagataaaaccgtagttattgtgggaattccaaaaccccaac 201  Q
    |||||||||||||  ||||| ||||| |||||| ||| |||  | || |  | ||| ||||||| || ||||||||||||||| | | ||||||||||||    
T  52698882 gggcttcccattggtttttgaaaacgataatacggaataccaacggccaagataacgatagatataatcgtagttattgtgggtaatgcaaaaccccaac 52698783  T
Q  202 cccacccta 210  Q
     ||||||||    
T  52698782 tccacccta 52698774  T

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