View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19736_high_2 (Length: 652)
Name: NF19736_high_2
Description: NF19736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19736_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 350 - 643
Target Start/End: Complemental strand, 45493218 - 45492925
Alignment:
| Q |
350 |
gtcagaaatatgacttacattaaattgatcctaattcctgctcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttccc |
449 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45493218 |
gtcagaaatatgacttacattaaattgatcctaattcctgctcatccctcattgattaggttctctcctcaatacctgatttattgaagatcgagttccc |
45493119 |
T |
|
| Q |
450 |
ttctttgcgtaatttgaagtcactgaaagtaaaatcattcgtacctttgtgttctatacctgttttccgtatctcagccgactttttgcttcaaaactca |
549 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45493118 |
ttctttgcgtaatttgaagtcactgaaagtaaaatcattcgtacctttgtgttctatacctgtgttccgtatctcagccgactttttgcttcaaaactca |
45493019 |
T |
|
| Q |
550 |
ccgtccgcagaggttagccacataccatacgttgattaaggtaaacatgcatcgactttttaaacacaatattctggtttggtttttgcctttg |
643 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45493018 |
ccgtccgcagaggttagccacataccatacgttgattaaggtaaacatgcatcgactttttaaacacaatattctggtttggtttttgcctttg |
45492925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 391 - 479
Target Start/End: Complemental strand, 30597320 - 30597232
Alignment:
| Q |
391 |
tcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaagt |
479 |
Q |
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|||||| ||||||||||||||||||| | | | ||||||||||||||| | ||||||| ||| ||| |||| ||||||| ||| ||||| |
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| T |
30597320 |
tcatccctcattgattaggttctctcgttagttcctgatttattgaaggttgagttccattccttgtgtaacttgaagttacttaaagt |
30597232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 425 - 483
Target Start/End: Original strand, 6845153 - 6845211
Alignment:
| Q |
425 |
ctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaagtaaaa |
483 |
Q |
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|||||||||||||| | ||||||| ||| ||| |||||||||||||||| | ||||||| |
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| T |
6845153 |
ctgatttattgaaggttgagttccattccttgtgtaatttgaagtcacttagagtaaaa |
6845211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 477
Target Start/End: Original strand, 32414626 - 32414703
Alignment:
| Q |
400 |
attgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaa |
477 |
Q |
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|||||||||||||| |||| | ||||||||||||||| | |||| ||||| ||| |||| ||||||||||||||| |
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| T |
32414626 |
attgattaggttctttccttggttcctgatttattgaaggtgaagttgccttccttgtgtaacttgaagtcactgaaa |
32414703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 265; Significance: 1e-147; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 351 - 643
Target Start/End: Complemental strand, 14288075 - 14287784
Alignment:
| Q |
351 |
tcagaaatatgacttacattaaattgatcctaattcctgctcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttccct |
450 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14288075 |
tcagaaatatgacttacattaaattgatcctaattcctgctcatccctcattgattaggttctctcctcaatacctgatttattgaagattgagttccct |
14287976 |
T |
|
| Q |
451 |
tctttgcgtaatttgaagtcactgaaagtaaaatcattcgtacctttgtgttctatacctgttttccgtatctcagccgactttttgcttcaaaactcac |
550 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14287975 |
tctttgcgtaatttgaagtcactgaaagtaaaatcattcgtacctttgtgttctatacctgtgttccgtatctcagccgactttttgcttcaaaactcac |
14287876 |
T |
|
| Q |
551 |
cgtccgcagaggttagccacataccatacgttgattaaggtaaacatgcatcgactttttaaacacaatattctggtttggtttttgcctttg |
643 |
Q |
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|
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14287875 |
cgtccgcagaggttagccacataccatatgttgattaaggtaaacatgcat-gactttttaaacacaatattctggtttggttttcgcctttg |
14287784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 14288724 - 14288498
Alignment:
| Q |
25 |
tagaaatcaacctcttatgtgatgttcaacatttaccacgctgcttattttcatctcaacttttaacacatcttcatctttctgtttgtcgtcctaaccg |
124 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
14288724 |
tagaaatcaatctcttatgtgatgttcaacatttaccacgctgcttattttcatctcaacttttaacacatcttcatctttctgtttgtcgtcctaatcg |
14288625 |
T |
|
| Q |
125 |
tcatgatgtcactttattcccaaattctctaaatatgccagcattaaccaaattatctctacggaactttgtcttttgtgtcggagatgatggccgtgtt |
224 |
Q |
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| T |
14288624 |
tgatgatatcactttattcccaaattctctaaatatgccagcattaaccaaattatctctacggaactttgtcttttgtgtcggagatgatggccgtgtt |
14288525 |
T |
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| Q |
225 |
gagcctttttcatcatgtaacaagttg |
251 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
14288524 |
gagcctttttcatcatgtaacaagttg |
14288498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 390 - 473
Target Start/End: Complemental strand, 28927539 - 28927456
Alignment:
| Q |
390 |
ctcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcact |
473 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||| ||||||||||| ||| | ||||||| ||| ||| |||| ||||||||||| |
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| T |
28927539 |
ctcacccttcattgattaggttctcaccttaattcctgatttattcaaggttgagttccattccttgtgtaaattgaagtcact |
28927456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 357 - 483
Target Start/End: Complemental strand, 27701026 - 27700900
Alignment:
| Q |
357 |
atatgacttacattaaattgatcctaattcctgctcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttg |
456 |
Q |
| |
|
||||||||| ||||||| ||||| | |||| ||||||||||||| ||||||||||||| | | ||||||||||||||| | ||||| |||| || |
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| T |
27701026 |
atatgacttgcattaaactgatcatgattcaccatcatccttcattgcttaggttctctccgtagttcctgatttattgaaggttgagttttcttcctta |
27700927 |
T |
|
| Q |
457 |
cgtaatttgaagtcactgaaagtaaaa |
483 |
Q |
| |
|
|||| |||||||| |||||||||||| |
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| T |
27700926 |
tgtaacttgaagtcgctgaaagtaaaa |
27700900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 360 - 471
Target Start/End: Original strand, 35336674 - 35336785
Alignment:
| Q |
360 |
tgacttacattaaattgatcctaattcctgctcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgt |
459 |
Q |
| |
|
|||||| ||| ||| |||||||||||| ||||| || |||| |||||||||||||| | | |||||||||||| || | || ||||||||||| || |
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| T |
35336674 |
tgacttgcataaaaatgatcctaattcaccctcatttttaattgcttaggttctctccttagttcctgatttattggaggttaagctcccttctttgtgt |
35336773 |
T |
|
| Q |
460 |
aatttgaagtca |
471 |
Q |
| |
|
|| ||||||||| |
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| T |
35336774 |
aacttgaagtca |
35336785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 398 - 482
Target Start/End: Complemental strand, 7057942 - 7057858
Alignment:
| Q |
398 |
tcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaagtaaa |
482 |
Q |
| |
|
||||||||||||||||||||| | | | |||||||| |||| | |||||| || ||||| ||| ||||||||||| |||||||| |
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| T |
7057942 |
tcattgattaggttctctccttagttcatgatttatcgaaggttgagttcaattttttgcataacttgaagtcacttaaagtaaa |
7057858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 426 - 482
Target Start/End: Complemental strand, 8032402 - 8032346
Alignment:
| Q |
426 |
tgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaagtaaa |
482 |
Q |
| |
|
||||||||||| | | ||||||||||| |||||||| ||||||||||||||| |||| |
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|
| T |
8032402 |
tgatttattgacggttgagttcccttccttgcgtaacttgaagtcactgaaattaaa |
8032346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 483
Target Start/End: Original strand, 13460643 - 13460721
Alignment:
| Q |
405 |
ttaggttctctcctcaatacctgatttattgaagatcgagttcccttctttgcgtaatttgaagtcactgaaagtaaaa |
483 |
Q |
| |
|
|||||||||||||| | | ||| ||||||||| | | || || ||||||||||||| ||||||||||| ||||||||| |
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|
| T |
13460643 |
ttaggttctctccttagttcctaatttattgagggttaagctctcttctttgcgtaacttgaagtcactcaaagtaaaa |
13460721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 357 - 483
Target Start/End: Original strand, 13492952 - 13493078
Alignment:
| Q |
357 |
atatgacttacattaaattgatcctaattcctgctcatccttcattgattaggttctctcctcaatacctgatttattgaagatcgagttcccttctttg |
456 |
Q |
| |
|
||||||||| |||| || ||||| | |||| | ||||||||||||| |||||||||| || | | |||||| |||| ||| | || ||||||| || |
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| T |
13492952 |
atatgacttgcattgaactgatcatgattcattatcatccttcattgcataggttctctacttagttcctgatctattaaaggttgacttcccttactta |
13493051 |
T |
|
| Q |
457 |
cgtaatttgaagtcactgaaagtaaaa |
483 |
Q |
| |
|
||||| ||||||| ||||||||||||| |
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|
| T |
13493052 |
cgtaacttgaagttactgaaagtaaaa |
13493078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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