View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19736_high_4 (Length: 505)
Name: NF19736_high_4
Description: NF19736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19736_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 38315312 - 38315756
Alignment:
| Q |
18 |
gcttttgggttccatctttgattttccagatttctttataattaagttccatctttgtcattcaagaatacaattacaagtttatttttggttgcaagtc |
117 |
Q |
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| T |
38315312 |
gcttttgggttccatctttgattttccagatttctttataattaagttccatctttgtcattcaagaatacaattacaagtttatttttggttgcaagtc |
38315411 |
T |
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| Q |
118 |
taaactttaaagaattttaaccacctgtttgtggtgttgacttctctgacagtaatagttttagttatatttcctgcaccctgttctatcttattgtttg |
217 |
Q |
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| T |
38315412 |
taaactttaaagaattttaaccacctgtttgtggtgttgacttctctgacagtaatagttttagtaatatttcctgcaccctgttctatcttattgtttg |
38315511 |
T |
|
| Q |
218 |
tttattgtcaccacaacccactaatatataagttgcttatttcttatagttgcagaagttgcccagtctctttttatctctacttcctctattatttact |
317 |
Q |
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| T |
38315512 |
tttattgtcaccacaacccactaatatataagttgcttatttcttatagttgcagaagttgcccagtctctttttatctctacttcctctattatttact |
38315611 |
T |
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| Q |
318 |
cctcccagtcaccgcaaataagtgtttcttcacctttttgatctaatgaaattctccaactaatgtgtaccaannnnnnnatccacctaacggtttaagg |
417 |
Q |
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| T |
38315612 |
cctcccagtcaccgcaaataagtgtttcttcacctttttgatctaatgaaattctccaactaatgtgtaccaatttttttatccacctaacggtttaagg |
38315711 |
T |
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| Q |
418 |
gtttaatataaaccatctttggtcccactattttactaaatctgt |
462 |
Q |
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| T |
38315712 |
gtttaatataaaccatctttggtcccactattttactaaatctgt |
38315756 |
T |
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Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 59 - 93
Target Start/End: Complemental strand, 38848635 - 38848601
Alignment:
| Q |
59 |
ttaagttccatctttgtcattcaagaatacaatta |
93 |
Q |
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| T |
38848635 |
ttaagttccatctttgtcattcaagaatacaatta |
38848601 |
T |
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