View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19736_low_1 (Length: 729)
Name: NF19736_low_1
Description: NF19736
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19736_low_1 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 596; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 596; E-Value: 0
Query Start/End: Original strand, 8 - 711
Target Start/End: Original strand, 5073232 - 5073930
Alignment:
| Q |
8 |
ggagcagcacagaggcgacatggattcgaactctcccctaacattaacattacgaagaactaattactaacatttatcgtgcaaaaagaaaatcaagtag |
107 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5073232 |
ggagcaacatagaggcgacatggattcgaactctcccctaacattaacattacgaagaactaattactaacatttatcgtgcaaaaagaaaatcaagtag |
5073331 |
T |
|
| Q |
108 |
tttattagaagaagnnnnnnn-tgtgaaaaagagataaggtctaaatagagtttatagaaagtgatttgtaaggatgtctcacgctaatgaataaaacat |
206 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5073332 |
tttattagaagaagaaaaaaaatgtgaaaaagagataaggtctaaatagagtttatagaaagtgatttgtaaggatgtctcacgctaatgaataaaacat |
5073431 |
T |
|
| Q |
207 |
tttagttcttaaaagtagtacataaagtatacaaactcagacaatttagtcgctgctattaaatgttactattaagatgttaccaacaaaattgacggat |
306 |
Q |
| |
|
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5073432 |
tttagttcttaaa-gtagta-----agtatacaaactcagacaatttagtcgctgctattaaatgttactattaagatgtcaccaacaaaattgacggat |
5073525 |
T |
|
| Q |
307 |
ttttcatatactttagagatgaaattaacgatttcatatactttaaaaactaaattgaagagagcaatagttcaaggactagcataatgaacctgcatag |
406 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
5073526 |
ttttcatatacttcagagacgaaattaacgatttcatatactttaaaaactaaattgaagagagcaatagtttaaggactagcataatgaacctgcatag |
5073625 |
T |
|
| Q |
407 |
aaagagcatccatatcagctcttaaagcaacaataggaggatttccagttcctatgaaaccaatgacaccagtgattgcaactggatgtttataaggaat |
506 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |
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|
| T |
5073626 |
aaagagcatccatatcagctcttaaagcaacaaaaggagacaatccagttcctatgaaaccaatgacaccagtgattgcaactggatatttatagggaat |
5073725 |
T |
|
| Q |
507 |
actcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaattttccttctgatattgatcatc |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5073726 |
actcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaattttccttctgatattgatcatc |
5073825 |
T |
|
| Q |
607 |
caatcataaacctcaggatttttggcactgtctagaaaattgttgaatgaggaattatgtgttgatgatgacaaaatttgtgttgcagcaaagacatgta |
706 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5073826 |
caatcataaacctcaggatttttggcactgtctagaaaattgttgaatgaggaattatgtgttgatgatgacaaaatttgtgttgcagcaaagacatgta |
5073925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 2e-45; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 558 - 707
Target Start/End: Complemental strand, 31558541 - 31558392
Alignment:
| Q |
558 |
ataacccaattctggattctcatgaattttccttctgatattgatcatccaatcataaacctcaggatttttggcactgtctagaaaattgttgaatgag |
657 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||||| ||||||||||||||||||||||||| |||| | |||| | ||||||||||| ||||||||| | |
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|
| T |
31558541 |
ataacccaattatggattcttatgaatcttccttctaatattgatcatccaatcataaaccttaggactcttggtaatgtctagaaaactgttgaatggg |
31558442 |
T |
|
| Q |
658 |
gaattatgtgttgatgatgacaaaatttgtgttgcagcaaagacatgtaa |
707 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
31558441 |
gaatcatgtgttgatgatgaaaaaatttgtgttgcagcaaagacaagtaa |
31558392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 408 - 617
Target Start/End: Original strand, 43224094 - 43224303
Alignment:
| Q |
408 |
aagagcatccatatcagctcttaaagcaacaataggaggatttccagttcctatgaaaccaatgacaccagtgattgcaactggatgtttataaggaata |
507 |
Q |
| |
|
|||||||||||| |||||||| | ||| |||| ||||||| |||||||||||| ||||||| ||||| || | |||||||||||||||||| ||| | |
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|
| T |
43224094 |
aagagcatccatgtcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttatattgaaca |
43224193 |
T |
|
| Q |
508 |
ctcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaattttccttctgatattgatcatcc |
607 |
Q |
| |
|
| | || |||||||||||||||||| | | ||| |||||||||||||||||||| | ||| |||||||||||||| ||||| || |||| | ||||| |
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|
| T |
43224194 |
cctaattcatccaattctgttcttataagcttactggtctcaaattcctcataaccaagttcaggattctcatgaatcttcctccttatatcaaccatcc |
43224293 |
T |
|
| Q |
608 |
aatcataaac |
617 |
Q |
| |
|
||||| |||| |
|
|
| T |
43224294 |
aatcaaaaac |
43224303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 397 - 617
Target Start/End: Complemental strand, 41654815 - 41654595
Alignment:
| Q |
397 |
acctgcatagaaagagcatccatatcagctcttaaagcaacaataggaggatttccagttcctatgaaaccaatgacaccagtgattgcaactggatgtt |
496 |
Q |
| |
|
||||||||| |||||||||||| |||||||| | ||| |||| ||||||| |||||||||||| ||||||| ||||| || | |||||||||||||| |
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|
| T |
41654815 |
acctgcataagaagagcatccatttcagctctgagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtt |
41654716 |
T |
|
| Q |
497 |
tataaggaatactcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaattttccttctgat |
596 |
Q |
| |
|
|||| | || || || || |||||||| ||||||||| | | ||| ||||||||||| |||||||| | ||| |||||||||||||| ||||| || || |
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|
| T |
41654715 |
tatatgtaacacccaattcatccaattttgttcttataagcttactggtctcaaattcttcataaccaagttcaggattctcatgaatcttcctccttat |
41654616 |
T |
|
| Q |
597 |
attgatcatccaatcataaac |
617 |
Q |
| |
|
|| | |||||||||| |||| |
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|
| T |
41654615 |
atcaaccatccaatcaaaaac |
41654595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 408 - 587
Target Start/End: Original strand, 43206385 - 43206564
Alignment:
| Q |
408 |
aagagcatccatatcagctcttaaagcaacaataggaggatttccagttcctatgaaaccaatgacaccagtgattgcaactggatgtttataaggaata |
507 |
Q |
| |
|
||||||||||||||||||||| | |||||||| ||||||| |||||||||||| ||||||| ||||| || | |||||||||||||||||| ||| | |
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|
| T |
43206385 |
aagagcatccatatcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtttatattgaaca |
43206484 |
T |
|
| Q |
508 |
ctcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaatttt |
587 |
Q |
| |
|
| || | |||||||| ||||||||| | | ||| ||||||||||| | ||||| || ||| ||||||||||||||||| |
|
|
| T |
43206485 |
cccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttt |
43206564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 408 - 587
Target Start/End: Original strand, 43227895 - 43228074
Alignment:
| Q |
408 |
aagagcatccatatcagctcttaaagcaacaataggaggatttccagttcctatgaaaccaatgacaccagtgattgcaactggatgtttataaggaata |
507 |
Q |
| |
|
|||||||||||| |||||||| | |||||||| ||||||| |||||||||||| ||||||| ||||| || | |||||||||||||||||| ||| | |
|
|
| T |
43227895 |
aagagcatccatgtcagctctaagagcaacaaaaggaggaagaccagttcctatgtaaccaataacacctgtaactgcaactggatgtttatattgaaca |
43227994 |
T |
|
| Q |
508 |
ctcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaatttt |
587 |
Q |
| |
|
| || | |||||||| ||||||||| | | ||| ||||||||||| | ||||| || ||| ||||||||||||||||| |
|
|
| T |
43227995 |
cccaactcatccaattttgttcttataagcttactagtctcaaattcttgataactcagttcaggattctcatgaatttt |
43228074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 397 - 617
Target Start/End: Original strand, 43213348 - 43213568
Alignment:
| Q |
397 |
acctgcatagaaagagcatccatatcagctcttaaagcaacaataggaggatttccagttcctatgaaaccaatgacaccagtgattgcaactggatgtt |
496 |
Q |
| |
|
||||||||| |||||||||||| |||||||| | ||| |||| ||||||| |||||||||||| ||||||| ||||| || | | |||||||||||| |
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|
| T |
43213348 |
acctgcataagaagagcatccatctcagctctaagagcgacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactacaactggatgtt |
43213447 |
T |
|
| Q |
497 |
tataaggaatactcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaattttccttctgat |
596 |
Q |
| |
|
|||| || | || | || ||| |||| ||||||||| | | ||| || |||||||| |||||||| | ||| |||||||||||||| ||||| || || |
|
|
| T |
43213448 |
tatatgggacacctaattcatctaattttgttcttataagcttactggtttcaaattcttcataaccaacttcaggattctcatgaatcttcctccttat |
43213547 |
T |
|
| Q |
597 |
attgatcatccaatcataaac |
617 |
Q |
| |
|
|| | |||||||||| |||| |
|
|
| T |
43213548 |
atcaaccatccaatcaaaaac |
43213568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 408 - 587
Target Start/End: Complemental strand, 41650264 - 41650085
Alignment:
| Q |
408 |
aagagcatccatatcagctcttaaagcaacaataggaggatttccagttcctatgaaaccaatgacaccagtgattgcaactggatgtttataaggaata |
507 |
Q |
| |
|
||||||||||||||||||||| | ||| |||| ||||||| |||||||||||| ||||||| ||||| || | |||||||||||||||||| || | | |
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|
| T |
41650264 |
aagagcatccatatcagctctgagagctacaaaaggaggaagaccagttcctatgtaaccaataacacctgtcactgcaactggatgtttatatgggaca |
41650165 |
T |
|
| Q |
508 |
ctcagtttatccaattctgttcttatcaattcacttgtctcaaattcctcataacccaattctggattctcatgaatttt |
587 |
Q |
| |
|
| | || |||||||| ||||| ||| | | ||| || | |||||| | ||||| || ||| ||||||||||||||||| |
|
|
| T |
41650164 |
cctaattcatccaattttgttcgtataagcttactagttttaaattcttgataactcagttcaggattctcatgaatttt |
41650085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 560 - 690
Target Start/End: Original strand, 34595261 - 34595389
Alignment:
| Q |
560 |
aacccaattctggattctcatgaattttccttctgatattgatcatccaatcataaacctcaggatttttggcactgtctagaaaattgttgaatgagga |
659 |
Q |
| |
|
||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||||| | |||||| ||| || ||||||||||||||||||||||||| |
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|
| T |
34595261 |
aacccaattatggattctcatgaaccttc--tctgatattgatcattcaatcataaactttaggattcttgacaatgtctagaaaattgttgaatgagga |
34595358 |
T |
|
| Q |
660 |
attatgtgttgatgatgacaaaatttgtgtt |
690 |
Q |
| |
|
|||||| ||| ||||||||||||||||||| |
|
|
| T |
34595359 |
attatgcattgctgatgacaaaatttgtgtt |
34595389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 274 - 351
Target Start/End: Complemental strand, 2055591 - 2055513
Alignment:
| Q |
274 |
actattaagatgttaccaacaaaattgacggatttttcatatactttagagatgaaatt-aacgatttcatatacttta |
351 |
Q |
| |
|
||||||||||||| | || |||||||| ||||||||||||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
2055591 |
actattaagatgtgaaggactaaattgaccaatttttcatatactttagagactaaattgaccgatttcatatacttta |
2055513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 307 - 367
Target Start/End: Original strand, 5099500 - 5099561
Alignment:
| Q |
307 |
ttttcatatactttagagatgaaattaacg-atttcatatactttaaaaactaaattgaaga |
367 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||||||| |||||| |||||||| |||| |
|
|
| T |
5099500 |
ttttcatatactttagggactaaattaacggatttcatatagtttaaagactaaatttaaga |
5099561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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