View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19736_low_5 (Length: 481)

Name: NF19736_low_5

Description: NF19736

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF19736_low_5

[»] chr3 (5 HSPs)

Alignment Details

Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 5)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 129; E-Value: 1e-66

Query Start/End: Original strand, 349 - 481

Target Start/End: Original strand, 816529 - 816661

Alignment:

Q	349	taattaaaaatcaagctcataagaaaaccacaattaggcagagaaccgattaatcaaaccacaatccatacaattttacaacaaaaactcatagcaagaa	448	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	816529	taattaaaaatcaagctcataagaaaaccacaattaggcagagaaccaattaatcaaaccacaatccatacaattttacaacaaaaactcatagcaagaa	816628	T

Q	449	atgaaaaccaaaattgagcataaaaatcaaaac	481	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	816629	atgaaaaccaaaattgagcataaaaatcaaaac	816661	T

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Target: chr3; HSP #2

Raw Score: 61; E-Value: 5e-26

Query Start/End: Original strand, 213 - 273

Target Start/End: Original strand, 816393 - 816453

Alignment:

Q	213	cataagaaaccacaactaagcaaagacccaattaatcgaaccataatatatacaatttcac	273	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	816393	cataagaaaccacaactaagcaaagacccaattaatcgaaccataatatatacaatttcac	816453	T

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Target: chr3; HSP #3

Raw Score: 41; E-Value: 0.00000000000005

Query Start/End: Original strand, 373 - 481

Target Start/End: Original strand, 816684 - 816801

Alignment:

Q	373	aaaccacaattaggcagagaaccgattaatcaaaccacaatccata--caattttacaacaaaaac-------tcatagcaagaaatgaaaaccaaaatt	463	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \| \| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	816684	aaaccacaattaagcaaaaacccaattaatcaaaccacaattcatatacaattttacaaaaaaaaaaaaaaaatcaaagcaagaaatgaaaacgaaaatt	816783	T

Q	464	gagcataaaaatcaaaac	481	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	816784	gagcataaaaatcaaaac	816801	T

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Target: chr3; HSP #4

Raw Score: 38; E-Value: 0.000000000003

Query Start/End: Original strand, 99 - 136

Target Start/End: Original strand, 816279 - 816316

Alignment:

Q	99	gataagaagccgcaacaaagcaaaggaaagaccctatt	136	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	816279	gataagaagccgcaacaaagcaaaggaaagaccctatt	816316	T

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Target: chr3; HSP #5

Raw Score: 33; E-Value: 0.000000003

Query Start/End: Original strand, 213 - 270

Target Start/End: Original strand, 816678 - 816737

Alignment:

Q	213	cataagaaaccacaactaagcaaagacccaattaatcgaaccataat--atatacaattt	270	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	816678	cataagaaaccacaattaagcaaaaacccaattaatcaaaccacaattcatatacaattt	816737	T

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