View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19737_high_3 (Length: 372)
Name: NF19737_high_3
Description: NF19737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19737_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 17 - 358
Target Start/End: Complemental strand, 10072317 - 10071977
Alignment:
| Q |
17 |
caagttctccttctctagatctcggaatttacctagctcttaagagaaagacatgaattaatattttgtatagatattattagttcaaaacgatgaaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10072317 |
caagttctccttctctagatctcggaatttacctagctcttatgagaaagacatgaattaatattttgtatagatattattagttcaaaacgatgaaatt |
10072218 |
T |
|
| Q |
117 |
cgtagcacttgatccatggaaagtatggattctatattcaatgatagaaaaatgctatcaatagcattttttatcactatatgaagaattttttcgtgga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
10072217 |
cgtagcacttgatccatggaaagtatggattctatattcagtgatagaaaaatgctatcaatagcattttttgtcactatatgaagaatttttt-gtgga |
10072119 |
T |
|
| Q |
217 |
tttgggttgacgaattacatcatttgaactattacaatgagccaaccgttctagagtccaacaacaatgcttctgcaacttgacaagaaccaacatcttg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10072118 |
tttgggttgacgaattacatcatttgaactattacaatgagccaaccgtgctagagtccaacaacaatgcttctgcaacttgacaagaaccaacatcttg |
10072019 |
T |
|
| Q |
317 |
tttagtaccatgctagacaagaactagcacattgttgattct |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10072018 |
cttagtaccatgctagacaagaactagcacattgttgattct |
10071977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 116
Target Start/End: Complemental strand, 10103780 - 10103697
Alignment:
| Q |
31 |
ctagatctcggaatttacctagctcttaagagaaagacatgaattaatattttgtatagatattattagttcaaaacgatgaaatt |
116 |
Q |
| |
|
|||||||| |||| |||| ||||||||| | | |||| ||||||||||||| |||||||| |||||||||||| |||||||||| |
|
|
| T |
10103780 |
ctagatcttggaagttacgtagctcttatggggaagagatgaattaatatt--gtatagattatattagttcaaagcgatgaaatt |
10103697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University