View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19737_low_1 (Length: 823)

Name: NF19737_low_1
Description: NF19737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19737_low_1
NF19737_low_1
[»] chr8 (18 HSPs)
chr8 (235-811)||(14727555-14728127)
chr8 (22-198)||(14728126-14728302)
chr8 (473-618)||(15329839-15329984)
chr8 (473-618)||(15510208-15510353)
chr8 (473-618)||(28865933-28866078)
chr8 (488-654)||(28693133-28693300)
chr8 (470-653)||(30648837-30649020)
chr8 (466-648)||(26089184-26089369)
chr8 (427-582)||(29552811-29552966)
chr8 (512-648)||(27714299-27714435)
chr8 (24-162)||(15330291-15330420)
chr8 (24-162)||(15510660-15510789)
chr8 (509-589)||(26090238-26090318)
chr8 (746-807)||(26089059-26089120)
chr8 (24-162)||(28866387-28866516)
chr8 (737-811)||(28865756-28865830)
chr8 (746-811)||(30648692-30648757)
chr8 (560-618)||(31039553-31039611)
[»] chr1 (2 HSPs)
chr1 (388-667)||(26086281-26086563)
chr1 (736-810)||(26086619-26086693)
[»] chr7 (4 HSPs)
chr7 (492-634)||(6610854-6610999)
chr7 (472-647)||(17292587-17292762)
chr7 (736-805)||(6611070-6611139)
chr7 (736-805)||(17292838-17292907)
[»] chr3 (2 HSPs)
chr3 (506-653)||(4819862-4820009)
chr3 (736-811)||(4819717-4819792)


Alignment Details
Target: chr8 (Bit Score: 384; Significance: 0; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 235 - 811
Target Start/End: Complemental strand, 14728127 - 14727555
Alignment:
Q  235 catacaaaacgacaaaccaaataaaaataaaatccaagggattgtaacagtagcgacggcgacatctgtaggggatatctgaaacatagaaaccaggtaa 334  Q
    |||||||| ||||||||||||||||||||||| | ||||| ||  || | || ||  |  ||||||||||||||||||||||| |||| ||| |||||||    
T  14728127 catacaaaccgacaaaccaaataaaaataaaagcaaaggggttccaaaaataacggtgttgacatctgtaggggatatctgaagcatacaaatcaggtaa 14728028  T
Q  335 caaggcaaaaacgaactcatcagaatgtacacagtcagactggattgcgtacaacttgaggccataataactattgttataactgatgtgccaaaggaaa 434  Q
    |||||||||||||||||||||||| ||||||||   | || ||||||||||| ||||||||||||||||| |||||||||| |||||| |  ||||||||    
T  14728027 caaggcaaaaacgaactcatcagagtgtacacaaatataccggattgcgtactacttgaggccataataattattgttatagctgatgagagaaaggaaa 14727928  T
Q  435 ccatattccaaattgaaaacacgaagaaaagatatcctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgtt 534  Q
     || ||| |||||||||||   | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||||    
T  14727927 acagattgcaaattgaaaattgggagaaaagatatcctgacaagacagatcttccaacattttttggggtggaaatagtagaattggaggaagtgatgtt 14727828  T
Q  535 caaattattgtcaccagcactaatctgataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaa 634  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||    
T  14727827 caaattattgtcaccagcactaatctgataaactccaccagggggactcaaaactgattggtacatggcagttgcaataagagtggcgactatcaaccaa 14727728  T
Q  635 atgctgcgttgctcttctgtcatgtcacttctagtgcgagttatctcagttaccaatttattactcatagttttggttgtggccattaacctcaaactat 734  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |       
T  14727727 atgttgcgttgctcttctgtcatgtcacttctagtgcgagttatctcagataccaatttattactcatagttttggttgtggccattaacctcaacc--- 14727631  T
Q  735 gtatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctc 811  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14727630 -tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctc 14727555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 22 - 198
Target Start/End: Complemental strand, 14728302 - 14728126
Alignment:
Q  22 agtcacaatttcctaaaattgaacaaaaacaaatgataacaataacaatggaaatgaaaattttgcaaattgatgtggatatattgttgtctttgaattc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14728302 agtcacaatttcctaaaattgaacaaaaacaaatgataacaataacaatggaaatgaaaattttgcaaattgatgtggatatattgttgtctttgaattc 14728203  T
Q  122 ggtcagcagaactggtttgagttgtggttctaattagtgatttcaccatctacctctgacccacaaccttcgcatca 198  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  14728202 ggtccgcagaactggtttgagttgtggttctaattagtgatttcaccatctacctctgacccacaaacttcgcatca 14728126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 473 - 618
Target Start/End: Complemental strand, 15329984 - 15329839
Alignment:
Q  473 gacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccac 572  Q
    ||||||| |||| | |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15329984 gacaagatagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccac 15329885  T
Q  573 cagggggactcaaagctgattggtacatggcagttgcaacaagagt 618  Q
    |||||||||||| || ||||| |||||||| |||||||| ||||||    
T  15329884 cagggggactcagagttgattcgtacatggtagttgcaataagagt 15329839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 473 - 618
Target Start/End: Complemental strand, 15510353 - 15510208
Alignment:
Q  473 gacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccac 572  Q
    ||||||| |||| | |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  15510353 gacaagatagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagcactaatctgataaactccac 15510254  T
Q  573 cagggggactcaaagctgattggtacatggcagttgcaacaagagt 618  Q
    |||||||||||| || ||||| |||||||| |||||||| ||||||    
T  15510253 cagggggactcagagttgattcgtacatggtagttgcaataagagt 15510208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 473 - 618
Target Start/End: Complemental strand, 28866078 - 28865933
Alignment:
Q  473 gacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccac 572  Q
    |||||||||||| | |||||||||| | |||| |||||||||||||  ||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  28866078 gacaagacagatttcccaacattttttagggtagaaatagtagaattggaggaagtgatgttcaaattattgtcatcagaactaatctgataaaatccac 28865979  T
Q  573 cagggggactcaaagctgattggtacatggcagttgcaacaagagt 618  Q
    |||||||||||| || ||||| | |||||| |||||||| ||||||    
T  28865978 cagggggactcagagttgattcgaacatggtagttgcaataagagt 28865933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 488 - 654
Target Start/End: Original strand, 28693133 - 28693300
Alignment:
Q  488 ccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcact-aatctgataaactccaccagggggactcaaa 586  Q
    ||||||||| ||||||| ||||||||||| | |||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||||||  ||| |    
T  28693133 ccaacatttgctggggtagaaatagtagagtttgaggaagtgatgttcaaattactgtcaccagcactaaatctgataaattccaccagggggtgtcaga 28693232  T
Q  587 gctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgt 654  Q
    |||||||   |||||| |||||||| |||||| |||| ||| ||||||||| ||||||| || |||||    
T  28693233 gctgattcaaacatggtagttgcaataagagtcgcgactattaaccaaatgttgcgttgatcctctgt 28693300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 470 - 653
Target Start/End: Complemental strand, 30649020 - 30648837
Alignment:
Q  470 cctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactc 569  Q
    ||||||||||| ||| | ||| ||||| ||||||  ||||| ||| |||  |||||||||||||||   ||| ||||||||||||||| |||||||| ||    
T  30649020 cctgacaagactgatttcccagcatttcctggggcagaaatggtaaaattggaggaagtgatgttcgtgttagtgtcaccagcactaacctgataaattc 30648921  T
Q  570 caccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctg 653  Q
    ||||||||||||||||  ||||||| || |||||||| ||||||||||| || | |||||||||| || | |||||||| ||||    
T  30648920 caccagggggactcaatcctgattgatagatggcagtcgcaacaagagtcgcaactatcaaccaagtgttacgttgctcctctg 30648837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 466 - 648
Target Start/End: Complemental strand, 26089369 - 26089184
Alignment:
Q  466 atatcctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattg---tcaccagcactaatctga 562  Q
    |||||||||||| |||||| | ||| ||||| |||| || |||||||||||||  |||||||||||||||| |  ||||   |||| |||||||| ||||    
T  26089369 atatcctgacaaaacagatttcccagcatttcctggagtagaaatagtagaattggaggaagtgatgttcacaccattgccatcactagcactaacctga 26089270  T
Q  563 taaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctc 648  Q
    |||| ||||| ||||||||||||  ||||||| || || ||||||||||||||||| || | |||||||||| || | ||||||||    
T  26089269 taaattccactagggggactcaatcctgattgataaatcgcagttgcaacaagagtcgcaactatcaaccaactgttacgttgctc 26089184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 427 - 582
Target Start/End: Complemental strand, 29552966 - 29552811
Alignment:
Q  427 aaaggaaaccatattccaaattgaaaacacgaagaaaagatatcctgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaa 526  Q
    ||||||||| |||||||||| |||||||   ||||||  |  | |||||| ||| ||| ||||| ||||| || |||| |||||||||||||  ||||||    
T  29552966 aaaggaaactatattccaaaatgaaaaccgaaagaaatcaacttctgacatgaccgattttccagcatttcctagggtagaaatagtagaattggaggaa 29552867  T
Q  527 gtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggact 582  Q
    |||||||||||||| ||||||| |||| ||| ||||||||||||||||||||||||    
T  29552866 gtgatgttcaaatttttgtcactagcattaacctgataaactccaccagggggact 29552811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 512 - 648
Target Start/End: Complemental strand, 27714435 - 27714299
Alignment:
Q  512 gtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaagctgattggtacatggcagttgcaa 611  Q
    |||||||  |||||||| ||||| | ||||||||||| |||| ||| ||||||||||||||||  |||| |||| |||||||| |||||||| |||||||    
T  27714435 gtagaattagaggaagtaatgttgacattattgtcactagcattaacctgataaactccaccaacgggagtcaatgctgattgatacatggctgttgcaa 27714336  T
Q  612 caagagtggcgattatcaaccaaatgctgcgttgctc 648  Q
    ||||||| || | ||||| |||| || ||||||||||    
T  27714335 caagagtcgcaactatcatccaagtgttgcgttgctc 27714299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 15330420 - 15330291
Alignment:
Q  24 tcacaatttcctaaaattgaacaaaaacaaatgataacaataacaatggaaatgaaaattttgcaaattgatgtggatatattgttgtctttgaattcgg 123  Q
    |||||||||||||||||||||||||||||||||| |||||| |      |||||||||||| | ||||||| || |||| |  || ||||||||||||||    
T  15330420 tcacaatttcctaaaattgaacaaaaacaaatgaaaacaatca------aaatgaaaatttag-aaattgacgttgataca--gtagtctttgaattcgg 15330330  T
Q  124 tcagcagaactggtttgagttgtggttctaattagtgat 162  Q
     |||||| ||||||||||||||  | |||||||||||||    
T  15330329 ccagcagtactggtttgagttgcagatctaattagtgat 15330291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 15510789 - 15510660
Alignment:
Q  24 tcacaatttcctaaaattgaacaaaaacaaatgataacaataacaatggaaatgaaaattttgcaaattgatgtggatatattgttgtctttgaattcgg 123  Q
    |||||||||||||||||||||||||||||||||| |||||| |      |||||||||||| | ||||||| || |||| |  || ||||||||||||||    
T  15510789 tcacaatttcctaaaattgaacaaaaacaaatgaaaacaatca------aaatgaaaatttag-aaattgacgttgataca--gtagtctttgaattcgg 15510699  T
Q  124 tcagcagaactggtttgagttgtggttctaattagtgat 162  Q
     |||||| ||||||||||||||  | |||||||||||||    
T  15510698 ccagcagtactggtttgagttgcagatctaattagtgat 15510660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 509 - 589
Target Start/End: Complemental strand, 26090318 - 26090238
Alignment:
Q  509 atagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaagct 589  Q
    ||||||||||   |||||||||||||| |||||||||||||| | ||||||||||||||||||||| ||||| ||||||||    
T  26090318 atagtagaattgaaggaagtgatgttccaattattgtcaccaaccctaatctgataaactccaccatggggagtcaaagct 26090238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 746 - 807
Target Start/End: Complemental strand, 26089120 - 26089059
Alignment:
Q  746 tgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttca 807  Q
    |||||||||||||| || |||||||||| |||||||||||| ||||||||||||||||||||    
T  26089120 tgtgggagcatcagtgatttctatgctaggttttgctccaaaacttaataatatactcttca 26089059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 162
Target Start/End: Complemental strand, 28866516 - 28866387
Alignment:
Q  24 tcacaatttcctaaaattgaacaaaaacaaatgataacaataacaatggaaatgaaaattttgcaaattgatgtggatatattgttgtctttgaattcgg 123  Q
    |||||||||||||||||||||||||||||||||| |||||| |      |||||||||||| | ||||||| || |||| |  || ||||||||||||||    
T  28866516 tcacaatttcctaaaattgaacaaaaacaaatgaaaacaatca------aaatgaaaatttag-aaattgaagttgataca--gtagtctttgaattcgg 28866426  T
Q  124 tcagcagaactggtttgagttgtggttctaattagtgat 162  Q
     |||||| | | |||||||||| || |||||||||||||    
T  28866425 ccagcagtagttgtttgagttgcggatctaattagtgat 28866387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 737 - 811
Target Start/End: Complemental strand, 28865830 - 28865756
Alignment:
Q  737 atgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctc 811  Q
    ||||||||||||||||||||| | |||||||| |||  |||||| |||| |||| |||||||||||||| |||||    
T  28865830 atgtgcacgtgtgggagcatctgtgacttctaagcttggttttgatccagcactgaataatatactcttaatctc 28865756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 746 - 811
Target Start/End: Complemental strand, 30648757 - 30648692
Alignment:
Q  746 tgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctc 811  Q
    |||||||  ||||| |||||||  |||| |||||| |||||||||||||||||||||||| |||||    
T  30648757 tgtgggataatcagtgacttctgagctaggttttgttccaacacttaataatatactcttgatctc 30648692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 560 - 618
Target Start/End: Original strand, 31039553 - 31039611
Alignment:
Q  560 tgataaactccaccagggggactcaaagctgattggtacatggcagttgcaacaagagt 618  Q
    ||||||||||||||||||||||| |  |||||||| ||| | |||||||||| ||||||    
T  31039553 tgataaactccaccagggggactaagtgctgattgatacgtcgcagttgcaataagagt 31039611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 388 - 667
Target Start/End: Original strand, 26086281 - 26086563
Alignment:
Q  388 acttgaggccataataactattgttataactgatgtgccaaaggaaaccatattccaaattgaaaacacgaagaaaagatatcctgacaagacagatctt 487  Q
    |||||||| |||||||| ||||||| ||| ||||||   |||||||| ||||||  ||| ||||||||   |||||| |  | |||||||||||||| |     
T  26086281 acttgaggtcataataattattgttgtaattgatgtataaaaggaaagcatatttgaaactgaaaacagacagaaaatagcttctgacaagacagatttc 26086380  T
Q  488 ccaacattttctggggtg---gaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactca 584  Q
    ||||||||| || ||||    |||||||||||||  |||||||||||||||||| |||||||||| |||||| || |||||||||||||||||||| |||    
T  26086381 ccaacatttccttgggtactagaaatagtagaattggaggaagtgatgttcaaactattgtcaccggcactactcggataaactccaccagggggagtca 26086480  T
Q  585 aagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctgtcatgtcacttcta 667  Q
     ||||||||  ||||||| ||| |||| |||||  |||| ||| ||||||||| |||||||||| ||||||||||||||||||    
T  26086481 gagctgattcatacatggtagtcgcaataagagctgcgactattaaccaaatgttgcgttgctcctctgtcatgtcacttcta 26086563  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 736 - 810
Target Start/End: Original strand, 26086619 - 26086693
Alignment:
Q  736 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatct 810  Q
    |||||||| |||||||||||||||||||||| ||||||  |||||||||  | ||||||||||||||||| ||||    
T  26086619 tatgtgcaagtgtgggagcatcagcgacttccatgctagattttgctcctgcccttaataatatactcttgatct 26086693  T

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Target: chr7 (Bit Score: 64; Significance: 2e-27; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 492 - 634
Target Start/End: Original strand, 6610854 - 6610999
Alignment:
Q  492 cattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtca---ccagcactaatctgataaactccaccagggggactcaaagc 588  Q
    |||||||||| || ||||||||||||| ||||||||||||||||| |  |||||||   ||| |||||| |||||||| ||||||||| ||||||||  |    
T  6610854 cattttctggagtagaaatagtagaatttgaggaagtgatgttcacaccattgtcatcaccaacactaacctgataaattccaccaggaggactcaatcc 6610953  T
Q  589 tgattggtacatggcagttgcaacaagagtggcgattatcaaccaa 634  Q
    |||||| || |||||||||||||| ||||| || ||||||||||||    
T  6610954 tgattgatagatggcagttgcaacgagagtcgcaattatcaaccaa 6610999  T

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Target: chr7; HSP #2
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 472 - 647
Target Start/End: Original strand, 17292587 - 17292762
Alignment:
Q  472 tgacaagacagatcttccaacattttctggggtggaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactcca 571  Q
    ||||||||| ||| | |||||||||| |||||| ||||| |||||||   |||||||| |||||| ||||||||||| || ||||| ||||||||| |||    
T  17292587 tgacaagaccgatttcccaacattttttggggtagaaattgtagaattgaaggaagtgttgttcacattattgtcactagtactaacctgataaacacca 17292686  T
Q  572 ccagggggactcaaagctgattggtacatggcagttgcaacaagagtggcgattatcaaccaaatgctgcgttgct 647  Q
    |||  |||| | |  | |||||| ||  |||| |||||||||||||| || |||||||||||| || |||||||||    
T  17292687 ccaacgggagttagcgttgattgataggtggctgttgcaacaagagtcgcaattatcaaccaagtgttgcgttgct 17292762  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 805
Target Start/End: Original strand, 6611070 - 6611139
Alignment:
Q  736 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactctt 805  Q
    |||||||| ||||||||  || || |||||||| |||| ||||||||||||| || ||||| ||||||||    
T  6611070 tatgtgcaagtgtgggattatgagtgacttctaagctaggttttgctccaactctgaataacatactctt 6611139  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 736 - 805
Target Start/End: Original strand, 17292838 - 17292907
Alignment:
Q  736 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactctt 805  Q
    |||||||| |||||||||||||   |||||||| |||| |||||| |||| |||| ||||| ||||||||    
T  17292838 tatgtgcaagtgtgggagcatccatgacttctaagctaggttttgatccagcactaaataagatactctt 17292907  T

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Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 506 - 653
Target Start/End: Complemental strand, 4820009 - 4819862
Alignment:
Q  506 gaaatagtagaatatgaggaagtgatgttcaaattattgtcaccagcactaatctgataaactccaccagggggactcaaagctgattggtacatggcag 605  Q
    |||||||||||||  | ||| |||||||||||| || |||||| |||| ||| ||||||||||||||| || |||  ||  ||||||||  |  ||||||    
T  4820009 gaaatagtagaattggtggacgtgatgttcaaactactgtcactagcattaacctgataaactccacctggtggagacattgctgattgaaaggtggcag 4819910  T
Q  606 ttgcaacaagagtggcgattatcaaccaaatgctgcgttgctcttctg 653  Q
    ||||||||||||| || | |||||||||| || |||||||||| ||||    
T  4819909 ttgcaacaagagtcgcaactatcaaccaagtgttgcgttgctcctctg 4819862  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 736 - 811
Target Start/End: Complemental strand, 4819792 - 4819717
Alignment:
Q  736 tatgtgcacgtgtgggagcatcagcgacttctatgctatgttttgctccaacacttaataatatactcttcatctc 811  Q
    |||||||| ||||||| ||||  | |||||| | || | ||||||||||||||||| ||||||||||||| |||||    
T  4819792 tatgtgcaagtgtgggtgcattggtgacttccaagccaggttttgctccaacacttgataatatactcttgatctc 4819717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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