View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19737_low_10 (Length: 319)

Name: NF19737_low_10
Description: NF19737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19737_low_10
NF19737_low_10
[»] chr6 (8 HSPs)
chr6 (136-227)||(13441184-13441271)
chr6 (13-87)||(31622994-31623068)
chr6 (13-80)||(33549103-33549170)
chr6 (1-118)||(13441037-13441171)
chr6 (33-88)||(6776609-6776664)
chr6 (88-118)||(24641152-24641182)
chr6 (14-80)||(30127400-30127466)
chr6 (33-82)||(6758430-6758479)
[»] chr2 (5 HSPs)
chr2 (14-88)||(26545840-26545914)
chr2 (86-118)||(25637233-25637265)
chr2 (14-88)||(19016031-19016105)
chr2 (15-84)||(37755977-37756046)
chr2 (12-80)||(39714990-39715058)
[»] scaffold0258 (1 HSPs)
scaffold0258 (14-118)||(15285-15399)
[»] chr7 (2 HSPs)
chr7 (14-80)||(48771938-48772004)
chr7 (12-84)||(2446306-2446378)
[»] scaffold0172 (1 HSPs)
scaffold0172 (12-88)||(32771-32847)
[»] chr4 (4 HSPs)
chr4 (14-78)||(33619206-33619270)
chr4 (88-118)||(23491991-23492021)
chr4 (88-118)||(40283948-40283978)
chr4 (11-84)||(51250528-51250601)
[»] scaffold0299 (1 HSPs)
scaffold0299 (33-80)||(11547-11594)
[»] chr5 (4 HSPs)
chr5 (14-118)||(16773807-16773921)
chr5 (13-84)||(30883204-30883275)
chr5 (14-88)||(8278277-8278351)
chr5 (14-80)||(14495815-14495881)
[»] chr3 (4 HSPs)
chr3 (13-88)||(31520607-31520682)
chr3 (13-76)||(36720380-36720443)
chr3 (14-88)||(17108900-17108974)
chr3 (12-88)||(46518626-46518702)
[»] chr1 (5 HSPs)
chr1 (14-118)||(1094525-1094639)
chr1 (13-88)||(25297771-25297846)
chr1 (13-84)||(40257398-40257469)
chr1 (47-88)||(17439950-17439991)
chr1 (85-118)||(21547442-21547475)
[»] scaffold0291 (1 HSPs)
scaffold0291 (14-80)||(2480-2546)
[»] chr8 (3 HSPs)
chr8 (15-80)||(29858059-29858124)
chr8 (86-118)||(968444-968476)
chr8 (12-80)||(28783058-28783126)


Alignment Details
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 136 - 227
Target Start/End: Original strand, 13441184 - 13441271
Alignment:
Q  136 attggcttcagtgacctatacagtggaagggctgcatttggagatccctctataaggttttgaaaaataggtgagataaatatgtgtctgag 227  Q
    |||||||||| ||||||||| | ||||||||||||||||||||||||||||    ||||||||||||||||||| |||||||| ||||||||    
T  13441184 attggcttcactgacctatataatggaagggctgcatttggagatccctct----ggttttgaaaaataggtgatataaatatttgtctgag 13441271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 87
Target Start/End: Complemental strand, 31623068 - 31622994
Alignment:
Q  13 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttga 87  Q
    |||||||||||| ||||| ||||||||||||||  ||| ||||||| |||||||||| |||||||||| ||||||    
T  31623068 aaacccacttgggttggtccggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggtttga 31622994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 80
Target Start/End: Original strand, 33549103 - 33549170
Alignment:
Q  13 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 80  Q
    |||||||||||| |||||  |||||||||||||  ||| ||||||| |||||||||| ||||||||||    
T  33549103 aaacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctca 33549170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 13441037 - 13441171
Alignment:
Q  1 ttggcttcactgaaacccacttggattggttcggtggtattggctgaggatctgggag-------cgtgctcctccacgaggtctcaagtttga------ 87  Q
    ||||||||||||||| |||||||| |||||  |||||||||||||  ||| |||||||        ||||||||||||||||||||||||| ||          
T  13441037 ttggcttcactgaaatccacttgggttggtcgggtggtattggcttgggacctgggagtgtgctctgtgctcctccacgaggtctcaagttcgattcttc 13441136  T
Q  88 ----tgccaatttaggtgggctaatttaacttctt 118  Q
        |||||||||| ||||||||||||||||||||    
T  13441137 tcagtgccaatttaagtgggctaatttaacttctt 13441171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 88
Target Start/End: Complemental strand, 6776664 - 6776609
Alignment:
Q  33 ggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 88  Q
    |||||||||||||  ||||||||| | |||||||||| ||| ||||||||||||||    
T  6776664 ggtggtattggcttgggatctgggggtgtgctcctcctcgatgtctcaagtttgat 6776609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 24641182 - 24641152
Alignment:
Q  88 tgccaatttaggtgggctaatttaacttctt 118  Q
    |||||||||||||||||||||||||||||||    
T  24641182 tgccaatttaggtgggctaatttaacttctt 24641152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 30127400 - 30127466
Alignment:
Q  14 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 80  Q
    ||||||||||| |||||  |||||||||||||  || |||||||| |||||||||  ||||||||||    
T  30127400 aacccacttgggttggtctggtggtattggcttggggtctgggagtgtgctcctcttcgaggtctca 30127466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 6758479 - 6758430
Alignment:
Q  33 ggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaag 82  Q
    ||||||||||||| ||||| |||||| ||||||| || ||||||||||||    
T  6758479 ggtggtattggcttaggatttgggagtgtgctccacctcgaggtctcaag 6758430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 26545840 - 26545914
Alignment:
Q  14 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 88  Q
    ||||||||||| |||||| ||||||||| |||  |||||||| || |||||||| | ||||||||||||||||||    
T  26545840 aacccacttgggttggtttggtggtattagcttgggatctggaagtgtgctccttctcgaggtctcaagtttgat 26545914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 25637233 - 25637265
Alignment:
Q  86 gatgccaatttaggtgggctaatttaacttctt 118  Q
    |||||||||||||||||||||||||||||||||    
T  25637233 gatgccaatttaggtgggctaatttaacttctt 25637265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Original strand, 19016031 - 19016105
Alignment:
Q  14 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 88  Q
    ||||||||||| |||||  | |||||||||||   ||  |||||| |||||||||| ||||||||||||||||||    
T  19016031 aacccacttgggttggtctgatggtattggcttgagacttgggagtgtgctcctcctcgaggtctcaagtttgat 19016105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 37756046 - 37755977
Alignment:
Q  15 acccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt 84  Q
    |||||||||| |||| | |||||||||||||  ||| ||||||  |||||||| | ||||||||||||||    
T  37756046 acccacttgggttggcttggtggtattggcttgggacctgggaatgtgctcctactcgaggtctcaagtt 37755977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 39714990 - 39715058
Alignment:
Q  12 gaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 80  Q
    ||||||||||||| ||||   |||||||||| ||  ||| ||||||| |||||||||| ||||||||||    
T  39714990 gaaacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctca 39715058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 14 - 118
Target Start/End: Complemental strand, 15399 - 15285
Alignment:
Q  14 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt----------tgatgccaatttaggtggg 103  Q
    ||||||||||| |||||  |||||||||||||  ||| ||||||| |||||||||| |||||||||| |||           ||||||||||||||||||    
T  15399 aacccacttgggttggtctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtggg 15300  T
Q  104 ctaatttaacttctt 118  Q
    |||||||| ||||||    
T  15299 ctaatttagcttctt 15285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 80
Target Start/End: Original strand, 48771938 - 48772004
Alignment:
Q  14 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 80  Q
    ||||||||||| |||| | |||||||||||||  ||||||||||| ||||||||||  |||||||||    
T  48771938 aacccacttgggttggcttggtggtattggcttgggatctgggagtgtgctcctccttgaggtctca 48772004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 84
Target Start/End: Original strand, 2446306 - 2446378
Alignment:
Q  12 gaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt 84  Q
    ||||||||||||| |||||  | |||||||||||  |||  |||||| |||||||||| |||| |||||||||    
T  2446306 gaaacccacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctcgagatctcaagtt 2446378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 88
Target Start/End: Complemental strand, 32847 - 32771
Alignment:
Q  12 gaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 88  Q
    ||||||||||||| ||||   |||||||||||||||||||||||| | | |||||||| | |||| | |||||||||    
T  32847 gaaacccacttgggttggcctggtggtattggctgaggatctgggggtgcgctcctcctcaaggttttaagtttgat 32771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 78
Target Start/End: Original strand, 33619206 - 33619270
Alignment:
Q  14 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtct 78  Q
    ||||||||||| |||  | ||||||||||||| |||||||||||||||| ||||||  |||||||    
T  33619206 aacccacttgggttgccttggtggtattggcttaggatctgggagcgtggtcctccttgaggtct 33619270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 23492021 - 23491991
Alignment:
Q  88 tgccaatttaggtgggctaatttaacttctt 118  Q
    |||||||||||||||||||||||||||||||    
T  23492021 tgccaatttaggtgggctaatttaacttctt 23491991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 40283978 - 40283948
Alignment:
Q  88 tgccaatttaggtgggctaatttaacttctt 118  Q
    |||||||||||||||||||||||||||||||    
T  40283978 tgccaatttaggtgggctaatttaacttctt 40283948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 51250601 - 51250528
Alignment:
Q  11 tgaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt 84  Q
    |||||||||||||| ||||   |||||||||||||  ||||||||||| ||||||| || | || |||||||||    
T  51250601 tgaaacccacttgggttggcctggtggtattggcttgggatctgggagtgtgctccgcctcaagatctcaagtt 51250528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 11547 - 11594
Alignment:
Q  33 ggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 80  Q
    |||||||||||||  ||||||||||| |||||||||| ||||||||||    
T  11547 ggtggtattggcttgggatctgggagtgtgctcctcctcgaggtctca 11594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 16773807 - 16773921
Alignment:
Q  14 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt----------tgatgccaatttaggtggg 103  Q
    ||||||||||  |||||  |||||||||| ||  ||| ||||||| |||||||||| |||||||||| |||          |||||||||||||||||||    
T  16773807 aacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtggg 16773906  T
Q  104 ctaatttaacttctt 118  Q
    |||||||| ||||||    
T  16773907 ctaatttagcttctt 16773921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 84
Target Start/End: Complemental strand, 30883275 - 30883204
Alignment:
Q  13 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt 84  Q
    |||||||||||| |||||   ||||||||||||  ||| ||||||| |||||||||| | ||||||||||||    
T  30883275 aaacccacttgggttggtctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaagtt 30883204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 8278351 - 8278277
Alignment:
Q  14 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 88  Q
    ||||||||||| |||||  | |||||||||||  |||  |||||| |||||||||| |||| |||||||||||||    
T  8278351 aacccacttgggttggtctgatggtattggcttgggacttgggagtgtgctcctcctcgagatctcaagtttgat 8278277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 14495881 - 14495815
Alignment:
Q  14 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 80  Q
    |||||| |||| |||||  |||||||||| ||  ||||||||||| |||||||||| ||||||||||    
T  14495881 aacccatttgggttggtctggtggtattgacttgggatctgggagtgtgctcctcctcgaggtctca 14495815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 31520682 - 31520607
Alignment:
Q  13 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 88  Q
    |||||||||||| ||||   ||||| |||||||  ||||||||||| |||||||||| |||||||| | |||||||    
T  31520682 aaacccacttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctcgaggtcttaggtttgat 31520607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 76
Target Start/End: Original strand, 36720380 - 36720443
Alignment:
Q  13 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggt 76  Q
    |||||||||||| |||||  |||||||||||||  |||| |||||| |||||||||| ||||||    
T  36720380 aaacccacttgggttggtctggtggtattggcttgggatatgggagtgtgctcctcctcgaggt 36720443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 88
Target Start/End: Complemental strand, 17108974 - 17108900
Alignment:
Q  14 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 88  Q
    ||||||||||| || ||| |||||||||| |||  ||| |||||| |||||||||| | |||||||| |||||||    
T  17108974 aacccacttgggttagtttggtggtattgactggagatgtgggagtgtgctcctcctcaaggtctcaggtttgat 17108900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 88
Target Start/End: Original strand, 46518626 - 46518702
Alignment:
Q  12 gaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 88  Q
    ||||||||||||| ||||    ||||||||||||  ||||||||||| |||||||||| | |||| ||| |||||||    
T  46518626 gaaacccacttgggttggcatagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggtttgat 46518702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 1094525 - 1094639
Alignment:
Q  14 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat----------gccaatttaggtggg 103  Q
    ||||||||||| |||||| | |||||||| ||  | | ||| ||| |||||||||||||||||||||| || |||          |||||||||||||||    
T  1094525 aacccacttgggttggtttgttggtattgacttggaacctgtgagtgtgctcctccacgaggtctcaaattcgattctctccggtgccaatttaggtggg 1094624  T
Q  104 ctaatttaacttctt 118  Q
    |||||||||||||||    
T  1094625 ctaatttaacttctt 1094639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 88
Target Start/End: Original strand, 25297771 - 25297846
Alignment:
Q  13 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtttgat 88  Q
    |||||||||||| |||||   ||||||||| || |||||||| ||| |||||||||| |||||||| | |||||||    
T  25297771 aaacccacttgggttggtctagtggtattgacttaggatctgagagtgtgctcctcctcgaggtctgaggtttgat 25297846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 13 - 84
Target Start/End: Original strand, 40257398 - 40257469
Alignment:
Q  13 aaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctcaagtt 84  Q
    |||||||||||| ||||   |||||||||||||   || ||||||| |||||||||| ||||||||||||||    
T  40257398 aaacccacttgggttggcctggtggtattggcttgagacctgggagtgtgctcctcctcgaggtctcaagtt 40257469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 88
Target Start/End: Original strand, 17439950 - 17439991
Alignment:
Q  47 aggatctgggagcgtgctcctccacgaggtctcaagtttgat 88  Q
    |||||||||||| |||||||||| |||||||||| |||||||    
T  17439950 aggatctgggagtgtgctcctcctcgaggtctcatgtttgat 17439991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 21547475 - 21547442
Alignment:
Q  85 tgatgccaatttaggtgggctaatttaacttctt 118  Q
    |||||||||||||||||||||| |||||||||||    
T  21547475 tgatgccaatttaggtgggctagtttaacttctt 21547442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 80
Target Start/End: Complemental strand, 2546 - 2480
Alignment:
Q  14 aacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 80  Q
    |||||| |||| ||||| |||||||||||| |  ||||||||||| |||||||||| | ||||||||    
T  2546 aacccatttgggttggtccggtggtattggttttggatctgggagtgtgctcctcctcaaggtctca 2480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 80
Target Start/End: Complemental strand, 29858124 - 29858059
Alignment:
Q  15 acccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 80  Q
    |||||||||||||||   |||||||||||||  ||| | ||||| |||||||||| ||||||||||    
T  29858124 acccacttggattggcctggtggtattggcttgggaccagggagtgtgctcctcctcgaggtctca 29858059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 968444 - 968476
Alignment:
Q  86 gatgccaatttaggtgggctaatttaacttctt 118  Q
    |||||||||||||||||||||||||| ||||||    
T  968444 gatgccaatttaggtgggctaatttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 80
Target Start/End: Original strand, 28783058 - 28783126
Alignment:
Q  12 gaaacccacttggattggttcggtggtattggctgaggatctgggagcgtgctcctccacgaggtctca 80  Q
    ||||||||||||| |||| | |||||||||||||   || ||||||| |||||||||| | ||||||||    
T  28783058 gaaacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctca 28783126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University