View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19737_low_2 (Length: 515)
Name: NF19737_low_2
Description: NF19737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19737_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 9 - 503
Target Start/End: Original strand, 24697616 - 24698122
Alignment:
| Q |
9 |
caagaaaatgatcaccatgaatgctcagaaccggacctggatgatagcctaaaacaaacatgactgtcaagaataagttaacgaatgtcaagaattcgtt |
108 |
Q |
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| T |
24697616 |
caagaatatgatcaccatgaatgctcagaaccggacctggatgatagcctaaaacaaacatgactgtcaagaataagttaacgaatgtcaagaattcgtt |
24697715 |
T |
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| Q |
109 |
aatttttattaaaaacccagttaacgaataagttgacaatatcaagaatatgatcacctcgaat---------gtccagaatccgatcttgacgatagcc |
199 |
Q |
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| T |
24697716 |
aatttttattaaaaacccagttaacgaataagttgacaatatcaagaatatgatcacctcgaatgtccagaatgtccagaatccgaccttgacgatagcc |
24697815 |
T |
|
| Q |
200 |
taaaataaacaggataagattattaatattggtctcaccctccgaagtagaatatccagtcaactcaggaaaaagtgttctaagcagcaagtagatgatc |
299 |
Q |
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| T |
24697816 |
taaaacaaacaggataagattattaattttggtctcaccctcggaagtagaatatccagtcaactcaggaaaaagtgttctaagcagcaagtagatgatc |
24697915 |
T |
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| Q |
300 |
cgaatcggtatctggttctccaacaaggtgagatcagacaagacatcttcatctctcagcagttcaattgctggaccaggaaagaa---gctgcatacta |
396 |
Q |
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| T |
24697916 |
cgaatcggtatctggttctccaacaaggtgagatcagacaagacatcttcatctctcagcagttcaattgctggaccaggaaagaaggggctgtctacta |
24698015 |
T |
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| Q |
397 |
ctgactctggtacttcatataatcccttttctatcagaagctctaacagaaaacaaccgtccactaacataatttgtgtgagctcttgtgtttcaatgtt |
496 |
Q |
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| T |
24698016 |
ctgactctggtacttcatataatcccttttctatcagaagctctaacagaaaacaaccgtccactaacataatttgtgtgagctcttgtgtttcaatgtt |
24698115 |
T |
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| Q |
497 |
gttgatg |
503 |
Q |
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| T |
24698116 |
gttgatg |
24698122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 306 - 380
Target Start/End: Complemental strand, 24536930 - 24536856
Alignment:
| Q |
306 |
ggtatctggttctccaacaaggtgagatcagacaagacatcttcatctctcagcagttcaattgctggaccagga |
380 |
Q |
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| T |
24536930 |
ggtatctgattctccaacaaggtgagatcagacaagacatcttcatctcttagcacttctagtgctggactagga |
24536856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 119 - 210
Target Start/End: Original strand, 24697584 - 24697675
Alignment:
| Q |
119 |
aaaaacccagttaacgaataagttgacaatatcaagaatatgatcacctcgaatgtccagaatccgatcttgacgatagcctaaaataaaca |
210 |
Q |
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| T |
24697584 |
aaaatcccaattaacgaataagttgacaatatcaagaatatgatcaccatgaatgctcagaaccggacctggatgatagcctaaaacaaaca |
24697675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 411 - 471
Target Start/End: Complemental strand, 24536831 - 24536771
Alignment:
| Q |
411 |
tcatataatcccttttctatcagaagctctaacagaaaacaaccgtccactaacataattt |
471 |
Q |
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| T |
24536831 |
tcatataatcccttcgatatcagaagctctaacagaaataaactgtccactaacataattt |
24536771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 309 - 360
Target Start/End: Original strand, 24897248 - 24897299
Alignment:
| Q |
309 |
atctggttctccaacaaggtgagatcagacaagacatcttcatctctcagca |
360 |
Q |
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| T |
24897248 |
atctggttttccaacaaagcgagatcagacaagacatcttcatctcttagca |
24897299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 361
Target Start/End: Original strand, 24855968 - 24856020
Alignment:
| Q |
309 |
atctggttctccaacaaggtgagatcagacaagacatcttcatctctcagcag |
361 |
Q |
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| T |
24855968 |
atctggttttccaacaaagtgagatcagacaagaaatcttcgtctcttagcag |
24856020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 471
Target Start/End: Original strand, 24897365 - 24897404
Alignment:
| Q |
432 |
agaagctctaacagaaaacaaccgtccactaacataattt |
471 |
Q |
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| T |
24897365 |
agaagctctaacagaaaacaaccatctactaacataattt |
24897404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 471
Target Start/End: Original strand, 24827674 - 24827728
Alignment:
| Q |
417 |
aatcccttttctatcagaagctctaacagaaaacaaccgtccactaacataattt |
471 |
Q |
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| T |
24827674 |
aatccctttgatatgagaagctccaacagaaaacatccatccactaacataattt |
24827728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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