View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19737_low_3 (Length: 423)
Name: NF19737_low_3
Description: NF19737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19737_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 390; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 413
Target Start/End: Complemental strand, 7260431 - 7260034
Alignment:
| Q |
16 |
caaaagcaacagcatttctcttaccagcagtggcttgaaaatgcaacaaaccttgtggaaaaaccataagctcacctttcttcaatgtcttgatataaac |
115 |
Q |
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| T |
7260431 |
caaaagcaacagcatttctcttaccagcagtagcttgaaaatgcaacaaaccttgtggaaaaaccataagctcacctttcttcaatgtcttgatataaac |
7260332 |
T |
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| Q |
116 |
agtgttagctgatgaaacaaatccagcagtgatgtgaccttgtgtcacaacaagaagttcactggcaccagggtgagtgtgaagtgggataacaccagca |
215 |
Q |
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| T |
7260331 |
agtgttagctgatgaaacaaatccagcagtgatgtgaccttgtgtcacaacaagaagttcactggcaccagggtgagtgtgaagtgggataacaccagca |
7260232 |
T |
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| Q |
216 |
ggaccaaggtctaaccttgctgcagagagaccaagaccattaacagctggaaattgagcaacaaatgcaggtgtaacggcggcgttgataatgtttgtta |
315 |
Q |
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| T |
7260231 |
ggaccaaggtctaaccttgctgcagagagaccaagaccattaacagctggaaattgagcaacaaatgcaggtgtaacggcggcgttgataatgtttgtta |
7260132 |
T |
|
| Q |
316 |
tgtttccaggtgcaattaagccttcaaatgcaaagtcatctgaggttactgttgaagctggcttgcaagggtagcctgaaggagtgtctaagcctttg |
413 |
Q |
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| T |
7260131 |
tgtttccaggtgcaattaagccttcaaatgcaaagtcatctgaggttactgttgaagctggcttgcaagggtagcctgaaggagtgtctgagcctttg |
7260034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 7266052 - 7265988
Alignment:
| Q |
222 |
aggtctaaccttgctgcagagagaccaagaccattaacagctggaaattgagcaacaaatgcagg |
286 |
Q |
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| T |
7266052 |
aggtctaattttgctgctgataaaccaagaccattaacagctggaaattgattaacaaatgcagg |
7265988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 91
Target Start/End: Complemental strand, 7271066 - 7271025
Alignment:
| Q |
50 |
ttgaaaatgcaacaaaccttgtggaaaaaccataagctcacc |
91 |
Q |
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| T |
7271066 |
ttgaaaatgcaacatcccttgtggaaaaaccataagatcacc |
7271025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 54 - 143
Target Start/End: Complemental strand, 18245990 - 18245901
Alignment:
| Q |
54 |
aaatgcaacaaaccttgtggaaaaaccataagctcacctttcttcaatgtcttgatataaacagtgttagctgatgaaacaaatccagca |
143 |
Q |
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| T |
18245990 |
aaatgcaacaatccttgtggaaaaaccataacatcacctttgtaaagtgttttaatgtaaacagtgttggcagaggaaacaaaaccagca |
18245901 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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