View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19737_low_5 (Length: 369)
Name: NF19737_low_5
Description: NF19737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19737_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 57 - 285
Target Start/End: Original strand, 43393883 - 43394113
Alignment:
| Q |
57 |
aaatccatgttcaggtccaacaaccatttgatgaatcggcaatgccaccgtcgattccattcacgaccaacgagagagcttcgtaacaacaaatttttcg |
156 |
Q |
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| T |
43393883 |
aaatccatgttcaggtccaacaaccatttgatgaatcggcaatgccaccgtcgattccatttacgaccaacgagagagcttcgtaacaacaaatttttcg |
43393982 |
T |
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| Q |
157 |
ccgtcatcttagtttgagtggataaaggctccataccgttgtagttcatttgcagcaagttccgacagtagtaatagaaaatataac--acccatttgca |
254 |
Q |
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| T |
43393983 |
gcgtcatcttagtttgggtggataaaggctccataccgttgcagttcatttgcagcaagttccaacagtagtaatagaaaatataacaaacccatttgca |
43394082 |
T |
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| Q |
255 |
attccatcatattattacttgggtgatggct |
285 |
Q |
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| T |
43394083 |
attccatcatattattacttgggtgatggct |
43394113 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 240
Target Start/End: Complemental strand, 17547403 - 17547306
Alignment:
| Q |
145 |
acaaatttttcgccgtcatcttagtttgagtggataaaggctccataccgttgtagttcatttgcagcaagttccgacagtagta--atagaaaatat |
240 |
Q |
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| T |
17547403 |
acaaatttctcggcttcatcttggtttcagtggataaaggctccataccgccctagttcatctgcggcaggttccagcagtagtaggatagaaaatat |
17547306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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