View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19737_low_6 (Length: 362)

Name: NF19737_low_6
Description: NF19737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19737_low_6
NF19737_low_6
[»] chr8 (9 HSPs)
chr8 (1-344)||(43907588-43907931)
chr8 (282-319)||(40280275-40280312)
chr8 (282-317)||(33553227-33553262)
chr8 (288-319)||(42237498-42237529)
chr8 (288-318)||(35374449-35374479)
chr8 (289-317)||(773294-773322)
chr8 (289-317)||(778354-778382)
chr8 (289-317)||(787788-787816)
chr8 (288-320)||(4558760-4558792)
[»] chr6 (6 HSPs)
chr6 (288-335)||(10728579-10728626)
chr6 (282-319)||(2205638-2205675)
chr6 (282-319)||(5731555-5731592)
chr6 (291-319)||(9093635-9093663)
chr6 (291-335)||(9559620-9559664)
chr6 (288-320)||(10749304-10749336)
[»] chr1 (9 HSPs)
chr1 (282-319)||(14737775-14737812)
chr1 (282-319)||(48748653-48748690)
chr1 (288-340)||(11211060-11211112)
chr1 (292-330)||(15477530-15477568)
chr1 (282-319)||(50319255-50319292)
chr1 (292-320)||(8081849-8081877)
chr1 (250-278)||(17631039-17631067)
chr1 (282-314)||(29834953-29834985)
chr1 (292-320)||(47002954-47002982)
[»] chr5 (6 HSPs)
chr5 (288-319)||(9202824-9202855)
chr5 (288-319)||(12595816-12595847)
chr5 (289-319)||(10363713-10363743)
chr5 (291-321)||(12425532-12425562)
chr5 (282-319)||(12242758-12242795)
chr5 (291-319)||(11835240-11835268)
[»] chr4 (5 HSPs)
chr4 (224-279)||(25487466-25487521)
chr4 (290-335)||(49803158-49803203)
chr4 (291-319)||(25885822-25885850)
chr4 (283-319)||(43505919-43505955)
chr4 (282-318)||(52294036-52294072)
[»] chr3 (4 HSPs)
chr3 (292-335)||(849609-849652)
chr3 (288-319)||(10101552-10101583)
chr3 (288-319)||(10212477-10212508)
chr3 (288-319)||(15304423-15304454)
[»] chr2 (3 HSPs)
chr2 (292-331)||(42457899-42457938)
chr2 (282-320)||(3227731-3227769)
chr2 (282-318)||(750460-750496)
[»] chr7 (3 HSPs)
chr7 (282-319)||(34035902-34035939)
chr7 (291-319)||(30180014-30180042)
chr7 (282-334)||(33601163-33601215)
[»] scaffold0024 (1 HSPs)
scaffold0024 (291-319)||(21357-21385)


Alignment Details
Target: chr8 (Bit Score: 332; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 344
Target Start/End: Original strand, 43907588 - 43907931
Alignment:
Q  1 tccgaaacattgtctatgcatcaatcgccgcaagtttctgacttcgaaaataaagagatgggagcgtttcaagaaaactttcaatcaagaaatgttgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  43907588 tccgaaacattgtctatgcatcaatcgccgcaagtttctgacttcgaaaataaagaggtgggagcgtttcaagaaaactttcaatcaagaaatgttgttg 43907687  T
Q  101 attctgttccaaattatgttgaatttgaaagcagccccacctcttccatgatcaacctgaacctatataaaagtaacagacaccataacggtatttcaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907688 attctgttccaaattatgttgaatttgaaagcagccccacctcttccatgatcaacctgaacctatataaaagtaacagacaccataacggtatttcaca 43907787  T
Q  201 ccatatctcattttataatctatactataggcctattttgattaactcatttgagtttatctattgacataaacacttgacatagcttatgaaaacaatt 300  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43907788 ccgtatctcattttataatctatactataggcctattttgattaactcatttgagtttatctattgacataaacacttgacatagcttatgaaaacaatt 43907887  T
Q  301 taactttattttatcttttacgctagaaataacttgtatgtaac 344  Q
    | ||||||||||||||||||||||||||||||||||||||||||    
T  43907888 tgactttattttatcttttacgctagaaataacttgtatgtaac 43907931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 40280275 - 40280312
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||| |||||||||||||||||    
T  40280275 atagcttatgaaaacaattttactttattttatctttt 40280312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 317
Target Start/End: Complemental strand, 33553262 - 33553227
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatctt 317  Q
    |||||||||||||||||||| |||||||||||||||    
T  33553262 atagcttatgaaaacaatttgactttattttatctt 33553227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 319
Target Start/End: Original strand, 42237498 - 42237529
Alignment:
Q  288 tatgaaaacaatttaactttattttatctttt 319  Q
    ||||||||||||||||||||||||||||||||    
T  42237498 tatgaaaacaatttaactttattttatctttt 42237529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 288 - 318
Target Start/End: Original strand, 35374449 - 35374479
Alignment:
Q  288 tatgaaaacaatttaactttattttatcttt 318  Q
    |||||||||||||||||||||||||||||||    
T  35374449 tatgaaaacaatttaactttattttatcttt 35374479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 773322 - 773294
Alignment:
Q  289 atgaaaacaatttaactttattttatctt 317  Q
    |||||||||||||||||||||||||||||    
T  773322 atgaaaacaatttaactttattttatctt 773294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 778382 - 778354
Alignment:
Q  289 atgaaaacaatttaactttattttatctt 317  Q
    |||||||||||||||||||||||||||||    
T  778382 atgaaaacaatttaactttattttatctt 778354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 317
Target Start/End: Complemental strand, 787816 - 787788
Alignment:
Q  289 atgaaaacaatttaactttattttatctt 317  Q
    |||||||||||||||||||||||||||||    
T  787816 atgaaaacaatttaactttattttatctt 787788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 320
Target Start/End: Complemental strand, 4558792 - 4558760
Alignment:
Q  288 tatgaaaacaatttaactttattttatctttta 320  Q
    |||||||| ||||||||||||||||||||||||    
T  4558792 tatgaaaataatttaactttattttatctttta 4558760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 288 - 335
Target Start/End: Complemental strand, 10728626 - 10728579
Alignment:
Q  288 tatgaaaacaatttaactttattttatcttttacgctagaaataactt 335  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||||    
T  10728626 tatgaaaacaatttaactttattttatcttttgctttagaaataactt 10728579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 2205638 - 2205675
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||| ||||| |||||||||||    
T  2205638 atagcttatgaaaacaatttgactttgttttatctttt 2205675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 5731592 - 5731555
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  5731592 atagcttatgaaaacaatttgacttcattttatctttt 5731555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Original strand, 9093635 - 9093663
Alignment:
Q  291 gaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||||||||||||    
T  9093635 gaaaacaatttaactttattttatctttt 9093663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 335
Target Start/End: Original strand, 9559620 - 9559664
Alignment:
Q  291 gaaaacaatttaactttattttatcttttacgctagaaataactt 335  Q
    ||||||||||||| ||||||||||||||| |  ||||||||||||    
T  9559620 gaaaacaatttaaatttattttatcttttgctatagaaataactt 9559664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 320
Target Start/End: Original strand, 10749304 - 10749336
Alignment:
Q  288 tatgaaaacaatttaactttattttatctttta 320  Q
    |||||||| ||||||||||||||||||||||||    
T  10749304 tatgaaaataatttaactttattttatctttta 10749336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 14737775 - 14737812
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||| |||||||||||||||||    
T  14737775 atagcttatgaaaacaatttgactttattttatctttt 14737812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 48748653 - 48748690
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||||||||||||| |||||||    
T  48748653 atagcttatgaaaacaatttaactttatttcatctttt 48748690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 288 - 340
Target Start/End: Complemental strand, 11211112 - 11211060
Alignment:
Q  288 tatgaaaacaatttaactttattttatcttttacgctagaaataacttgtatg 340  Q
    |||||||| |||||||||||||||||||||||   ||||||||||||| ||||    
T  11211112 tatgaaaaaaatttaactttattttatcttttgttctagaaataacttatatg 11211060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 330
Target Start/End: Complemental strand, 15477568 - 15477530
Alignment:
Q  292 aaaacaatttaactttattttatcttttacgctagaaat 330  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  15477568 aaaacaatttaactttattttatcttttactatagaaat 15477530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 50319292 - 50319255
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatctttt 319  Q
    ||||||||||||||||| || |||||||||||||||||    
T  50319292 atagcttatgaaaacaacttgactttattttatctttt 50319255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 320
Target Start/End: Complemental strand, 8081877 - 8081849
Alignment:
Q  292 aaaacaatttaactttattttatctttta 320  Q
    |||||||||||||||||||||||||||||    
T  8081877 aaaacaatttaactttattttatctttta 8081849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 17631039 - 17631067
Alignment:
Q  250 tttgagtttatctattgacataaacactt 278  Q
    |||||||||||||||||||||||||||||    
T  17631039 tttgagtttatctattgacataaacactt 17631067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 314
Target Start/End: Original strand, 29834953 - 29834985
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttat 314  Q
    |||||||||||||||||||| ||||||||||||    
T  29834953 atagcttatgaaaacaatttgactttattttat 29834985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 320
Target Start/End: Original strand, 47002954 - 47002982
Alignment:
Q  292 aaaacaatttaactttattttatctttta 320  Q
    |||||||||||||||||||||||||||||    
T  47002954 aaaacaatttaactttattttatctttta 47002982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 319
Target Start/End: Original strand, 9202824 - 9202855
Alignment:
Q  288 tatgaaaacaatttaactttattttatctttt 319  Q
    ||||||||||||||||||||||||||||||||    
T  9202824 tatgaaaacaatttaactttattttatctttt 9202855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 319
Target Start/End: Original strand, 12595816 - 12595847
Alignment:
Q  288 tatgaaaacaatttaactttattttatctttt 319  Q
    ||||||||||||||||||||||||||||||||    
T  12595816 tatgaaaacaatttaactttattttatctttt 12595847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 289 - 319
Target Start/End: Complemental strand, 10363743 - 10363713
Alignment:
Q  289 atgaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||||||||||||||    
T  10363743 atgaaaacaatttaactttattttatctttt 10363713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 291 - 321
Target Start/End: Complemental strand, 12425562 - 12425532
Alignment:
Q  291 gaaaacaatttaactttattttatcttttac 321  Q
    |||||||||||||||||||||||||||||||    
T  12425562 gaaaacaatttaactttattttatcttttac 12425532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Original strand, 12242758 - 12242795
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||| ||| |||||||||||||    
T  12242758 atagcttatgaaaacaatttgactctattttatctttt 12242795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Complemental strand, 11835268 - 11835240
Alignment:
Q  291 gaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||||||||||||    
T  11835268 gaaaacaatttaactttattttatctttt 11835240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 25487466 - 25487521
Alignment:
Q  224 actataggcctattttgattaactcatttgagtttatctattgacataaacacttg 279  Q
    ||||||| | |||||||||||||| |||||||||||||||||  ||||| ||||||    
T  25487466 actatagccatattttgattaacttatttgagtttatctattagcataagcacttg 25487521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 335
Target Start/End: Complemental strand, 49803203 - 49803158
Alignment:
Q  290 tgaaaacaatttaactttattttatcttttacgctagaaataactt 335  Q
    ||||||||||||||||| |||||||||||| |  ||||||||||||    
T  49803203 tgaaaacaatttaacttcattttatcttttgctatagaaataactt 49803158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Complemental strand, 25885850 - 25885822
Alignment:
Q  291 gaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||||||||||||    
T  25885850 gaaaacaatttaactttattttatctttt 25885822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 283 - 319
Target Start/End: Complemental strand, 43505955 - 43505919
Alignment:
Q  283 tagcttatgaaaacaatttaactttattttatctttt 319  Q
    |||||||| ||||||||||||| ||||||||||||||    
T  43505955 tagcttataaaaacaatttaacgttattttatctttt 43505919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Original strand, 52294036 - 52294072
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatcttt 318  Q
    |||| ||||||||||||||| ||||||||||||||||    
T  52294036 atagtttatgaaaacaatttcactttattttatcttt 52294072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 335
Target Start/End: Complemental strand, 849652 - 849609
Alignment:
Q  292 aaaacaatttaactttattttatcttttacgctagaaataactt 335  Q
    |||||||||||||||||||||||||||| || ||||||| ||||    
T  849652 aaaacaatttaactttattttatcttttccgatagaaatgactt 849609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 319
Target Start/End: Original strand, 10101552 - 10101583
Alignment:
Q  288 tatgaaaacaatttaactttattttatctttt 319  Q
    ||||||||||||||||||||||||||||||||    
T  10101552 tatgaaaacaatttaactttattttatctttt 10101583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 319
Target Start/End: Original strand, 10212477 - 10212508
Alignment:
Q  288 tatgaaaacaatttaactttattttatctttt 319  Q
    ||||||||||||||||||||||||||||||||    
T  10212477 tatgaaaacaatttaactttattttatctttt 10212508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 288 - 319
Target Start/End: Original strand, 15304423 - 15304454
Alignment:
Q  288 tatgaaaacaatttaactttattttatctttt 319  Q
    ||||||||||||||||||||||||||||||||    
T  15304423 tatgaaaacaatttaactttattttatctttt 15304454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 292 - 331
Target Start/End: Complemental strand, 42457938 - 42457899
Alignment:
Q  292 aaaacaatttaactttattttatcttttacgctagaaata 331  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  42457938 aaaacaatttaactttattttatcttttactatagaaata 42457899  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 282 - 320
Target Start/End: Original strand, 3227731 - 3227769
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatctttta 320  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  3227731 atagcttatgaaaacaatttaactttgttttatttttta 3227769  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 750496 - 750460
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatcttt 318  Q
    |||||||||||| |||||||||| |||||||||||||    
T  750496 atagcttatgaagacaatttaacattattttatcttt 750460  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 319
Target Start/End: Complemental strand, 34035939 - 34035902
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||||||||||| |||| ||||    
T  34035939 atagcttatgaaaacaatttaactttatattatttttt 34035902  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Complemental strand, 30180042 - 30180014
Alignment:
Q  291 gaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||||||||||||    
T  30180042 gaaaacaatttaactttattttatctttt 30180014  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 334
Target Start/End: Original strand, 33601163 - 33601215
Alignment:
Q  282 atagcttatgaaaacaatttaactttattttatcttttacgctagaaataact 334  Q
    |||||||||||||||| ||| |||||||||||| |||||   |||||||||||    
T  33601163 atagcttatgaaaacagtttgactttattttattttttagtgtagaaataact 33601215  T

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Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 291 - 319
Target Start/End: Original strand, 21357 - 21385
Alignment:
Q  291 gaaaacaatttaactttattttatctttt 319  Q
    |||||||||||||||||||||||||||||    
T  21357 gaaaacaatttaactttattttatctttt 21385  T

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