View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19737_low_7 (Length: 362)
Name: NF19737_low_7
Description: NF19737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19737_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 3 - 346
Target Start/End: Complemental strand, 13025230 - 13024887
Alignment:
| Q |
3 |
ttcaagatgctgaggattcttttgaagattttggtatggaaaagcaagttgtggaaaacaagtataagaaatttaaaagagaaggaagaggaaaaaatgg |
102 |
Q |
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| T |
13025230 |
ttcaagatgctgaggattcttttgaagattttggtatggaaaagcaagttgtggaaaacaagtataagaaattgaaaagagaaggaagaggaaaaaatgg |
13025131 |
T |
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| Q |
103 |
atttgggaagaattgttgtgcattggttagtggagtttgcattggcatgattttgatggggtttattatggtgaatctttctggttgctttgaatatggg |
202 |
Q |
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| T |
13025130 |
atttgggaagaattgttgtgcattggttagtggagtttgcattggcatgattttgatggggtttattatggtgaatctttctggttgctttgaatatggg |
13025031 |
T |
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| Q |
203 |
gaacaaacaaggtttgttattccaacatagaaagaaagtattggtaaactttgcatttcaatatctatcgtatagtttttatttacttcgatgatttttg |
302 |
Q |
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| T |
13025030 |
gaacaaacaaggtttgttattccaacatagaaagaaagtattggtaaactttgcatttcaatatctattgtatagtttttatttacttctatgatttttg |
13024931 |
T |
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| Q |
303 |
catttcttgttgtagttatatgatttgatttgtaatttggattt |
346 |
Q |
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| T |
13024930 |
catttcttgttgtagttatatgatttgatttgtaatttggattt |
13024887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 163; Significance: 5e-87; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 55 - 261
Target Start/End: Complemental strand, 5980893 - 5980687
Alignment:
| Q |
55 |
ggaaaacaagtataagaaatttaaaagagaaggaagaggaaaaaatggatttgggaagaattgttgtgcattggttagtggagtttgcattggcatgatt |
154 |
Q |
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| T |
5980893 |
ggaaaacaagtgtaggaaattgaaaagagaaggaagaggaaaaagtggatttgggaagaattgttgtgcattggttagtggagtttgcattggcatgatt |
5980794 |
T |
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| Q |
155 |
ttgatggggtttattatggtgaatctttctggttgctttgaatatggggaacaaacaaggtttgttattccaacatagaaagaaagtattggtaaacttt |
254 |
Q |
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| T |
5980793 |
ttgatggggtttattatggtaaatctttctggttgttttgaatatggggaacaaacaagttttcttgttccaacataggaggaaagtattggtaaacttt |
5980694 |
T |
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| Q |
255 |
gcatttc |
261 |
Q |
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||||||| |
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| T |
5980693 |
gcatttc |
5980687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 299 - 346
Target Start/End: Complemental strand, 5980696 - 5980649
Alignment:
| Q |
299 |
tttgcatttcttgttgtagttatatgatttgatttgtaatttggattt |
346 |
Q |
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| T |
5980696 |
tttgcatttcttgttgtagttatatgatttgatttgtaatttggattt |
5980649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 5980957 - 5980916
Alignment:
| Q |
3 |
ttcaagatgctgaggattcttttgaagattttggtatggaaa |
44 |
Q |
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| T |
5980957 |
ttcaagatgctgaggattcttttgaagattttggtatgaaaa |
5980916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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