View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19737_low_9 (Length: 323)
Name: NF19737_low_9
Description: NF19737
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19737_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 8 - 164
Target Start/End: Original strand, 30692570 - 30692726
Alignment:
| Q |
8 |
cgaagaaaatggaaaccgactcaagccatctaattcactagattcaaatggctgaccaatcccaacacttgagaatccaaggataacacgagtatgttga |
107 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
30692570 |
cgaagaaaagggaaaccgactcaagccatctaattcactagattcaaatggctgaccaatcccaacacttgagaatccaaggataacactagtatgttga |
30692669 |
T |
|
| Q |
108 |
ctaatgaagtgattaaacaaaaggttccttttcttttgcaaaatcactcttgaagcc |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
30692670 |
ctaatgaagtgattaaacaaaaggttccttttctttcgcaaaatcactcttgaagcc |
30692726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 177 - 303
Target Start/End: Original strand, 30692755 - 30692881
Alignment:
| Q |
177 |
caataaattccaacctttgatgtcagttaatttttagataaaacacttttaaaaacataatgcttcagtgtcattgatacaaatcccatagattatcacc |
276 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30692755 |
caataaattccaacctttgatatcagttaatttttagataaaacacttttaaaaacataatgcttcagtgtcattgatacaaatcccatagattatcacc |
30692854 |
T |
|
| Q |
277 |
tggaaagtgaaattatcactcttgtta |
303 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
30692855 |
tggaaagtgaaattatcactcttgtta |
30692881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University