View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19738_high_10 (Length: 326)
Name: NF19738_high_10
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 48159244 - 48159544
Alignment:
| Q |
14 |
gtatgctccttccaataatttcacgtactattacatcaatcaatcaaataataacaactaaaacaccattgttcatcatatacaaattatttgtttactt |
113 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48159244 |
gtatgctccttccaataatttcacgtacaattacatcaatcaatcaaataataacaactaaaacaccattgttcatcatatacaaattatttgtttactt |
48159343 |
T |
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| Q |
114 |
tgaattttggtgagtttggtaaatttatctcttatctcattttttaacaaatcattcattctgatttaaacagtctattttaatcattcatcatttatct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48159344 |
tgaattttggtgagtttggtaaatttatctcttatctcattttttaacaaatcattcattctgatttaaacagtctattttaatcattcatcatttatct |
48159443 |
T |
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| Q |
214 |
cacaaatacactaaattcactcaaatcaccaaataataaagataatcaattcatttctcaaattatttgggaagtgcagtacttcttcacttttctctgc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48159444 |
cacaaatacactaaattcactcaaatcaccaaataataaagataatcaattcatttctcaaattatttgggaagtgcagtacttcttcacttttctctgc |
48159543 |
T |
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| Q |
314 |
t |
314 |
Q |
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| T |
48159544 |
t |
48159544 |
T |
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