View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19738_high_11 (Length: 293)
Name: NF19738_high_11
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_high_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 20810567 - 20810294
Alignment:
| Q |
1 |
tcaatttatcaatgaggatggaaggtagatatcgctacatggaattggatgagttaaataatgaggaatcccatgattgcattaaatcatctaacaaata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810567 |
tcaatttatcaatgaggatggaaggtagatatcgctacatggaattggatgagttaaataatgaggaatcccatgattgcattaaatcatctaacaaata |
20810468 |
T |
|
| Q |
101 |
ttttatttggaccaatttatttattttatcgcttcatgattaaaaaagtactattcaaacttcttttgagaggtatattattttcaaacttgtttttgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810467 |
ttttatttggaccaatttatttattttatcgcttcatgattaaaaaagtactattcaaacttcttttgagaggtatattattttcaaacttgtttttgaa |
20810368 |
T |
|
| Q |
201 |
aacaccttttcgtatgtacttctagcgccatccaaaccaacaatatttccacctagttataaatttcactcact |
274 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20810367 |
aacaccttttcgtatgtacttctagcgccatccaacccaacaatatttccacctagttataaatttcactcact |
20810294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University