View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19738_high_13 (Length: 239)
Name: NF19738_high_13
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 23595520 - 23595710
Alignment:
| Q |
30 |
acaaattttctactttttagtactttaatcaatgttctaaactcactcgttaacattcctttaataaaaagcgcaagactcacacactactagggtggtg |
129 |
Q |
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| T |
23595520 |
acaaattttctactttttagtactttaatcaatgttctaaactcactcgttaacattcctttaataaaaagagcaagactcacacactactagggtcgtg |
23595619 |
T |
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| Q |
130 |
aaaggacataaaccattaaattcagttttgctaatatgatcaaggaaggaaagttgttaaaattttctctgttgatcatatatatgagcag |
220 |
Q |
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| T |
23595620 |
aaaggacataaaccatcaaatacagttttgctaatatgatcagggaaggaaagttgttacaattttctgtgttgatcatatatatgagcag |
23595710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 30 - 220
Target Start/End: Original strand, 23604442 - 23604632
Alignment:
| Q |
30 |
acaaattttctactttttagtactttaatcaatgttctaaactcactcgttaacattcctttaataaaaagcgcaagactcacacactactagggtggtg |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |
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| T |
23604442 |
acaaattttctactttttagtactttaatcaatgttctaaactcactcgttaacattcctttaataaaaagagcaagactcacacactactagggtcgtg |
23604541 |
T |
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| Q |
130 |
aaaggacataaaccattaaattcagttttgctaatatgatcaaggaaggaaagttgttaaaattttctctgttgatcatatatatgagcag |
220 |
Q |
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| T |
23604542 |
aaaggacataaaccatcaaatacagttttgctaatatgatcagggaaggaaagttgttacaattttctgtgttgatcatatatatgagcag |
23604632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 184
Target Start/End: Original strand, 23590336 - 23590416
Alignment:
| Q |
105 |
agactcacacactactagggtggtgaaaggacataaaccattaaattcagttttg-ctaatatgatcaaggaaggaaagtt |
184 |
Q |
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||||||||||||||||| |||||||||| ||||||||| ||||||||| ||||| | |||||||||| ||||||||||| |
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| T |
23590336 |
agactcacacactactaaggtggtgaaaagacataaacaattaaattctattttgtcaaatatgatcagcgaaggaaagtt |
23590416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 23576102 - 23576140
Alignment:
| Q |
182 |
gttgttaaaattttctctgttgatcatatatatgagcag |
220 |
Q |
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| T |
23576102 |
gttgttaaaattttctctgttgatcatatatatgagcag |
23576140 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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