View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19738_high_2 (Length: 510)
Name: NF19738_high_2
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 2e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 305 - 453
Target Start/End: Original strand, 12532162 - 12532310
Alignment:
| Q |
305 |
attattacaaagaaatataaatctaatttatcatggttttaatgagaaatctgattttctattcacactcacgacactatagctcaaatttttatgtctc |
404 |
Q |
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| T |
12532162 |
attagtacaaagaaatataaatctaatttatcatggttttaatgagaaatctgattttctattcacactcatgacactataactcaaatttttatgtctc |
12532261 |
T |
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| Q |
405 |
tacagtcacaatgtgactgtgatttgtgttgagaaacatgatagagatc |
453 |
Q |
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| T |
12532262 |
tacaatcacaatgtgactgtgatttgtgttgagaagcatgatagagatc |
12532310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 280
Target Start/End: Complemental strand, 678968 - 678894
Alignment:
| Q |
206 |
ttatgataaagtttcctcttaaaactcatggttttatgacaatatggttgttctcaagagtaaatagatgcatca |
280 |
Q |
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| T |
678968 |
ttatgataaagattcaccttaaaactcatggtttaatgacaatttggttgttctaaagtgtaaatagatgcatca |
678894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 322 - 449
Target Start/End: Complemental strand, 6843081 - 6842956
Alignment:
| Q |
322 |
taaatctaatttatcatggttttaatgagaaatctgattttctattcacactcacgacactatagctcaaatttttatgtctctacagtcacaatgtgac |
421 |
Q |
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| T |
6843081 |
taaatctaatttatcatggttttaatgagaaatctaattttctattcactctcatgacactatagctcaaatttt--tgtctccacaatcacagtgtgac |
6842984 |
T |
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| Q |
422 |
tgtgatttgtgttgagaaacatgataga |
449 |
Q |
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| T |
6842983 |
tgtgatttgtgttgagaagcatgataga |
6842956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 207 - 256
Target Start/End: Complemental strand, 4633090 - 4633041
Alignment:
| Q |
207 |
tatgataaagtttcctcttaaaactcatggttttatgacaatatggttgt |
256 |
Q |
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| T |
4633090 |
tatgataaagtttcctcttaaaactcatggttttatgggaatatgtttgt |
4633041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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