View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19738_high_3 (Length: 454)
Name: NF19738_high_3
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 35054715 - 35054287
Alignment:
| Q |
11 |
cataggtggtttagaaggaaaatcatcagtgaaaacacctttgatattataataatttgcttgaagaagtgatacagtaggcattaaaaatgtgatattg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35054715 |
cataggtggtttagaaggaaaatcatcagtgaaaacacctttgatattatagtaatttgcttgaagaagtgatacagtaggcattaaaaatgtgatattg |
35054616 |
T |
|
| Q |
111 |
tttatagcagacacaagcttgttatcagttatgcatgtatcacatggattaagtccaacagttattgcaaataaaagagagtgatcaatggttagtgaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35054615 |
tttatagcagacacaagcttgttatcagttatgcatgtatcacatggattaagtccaacagttattgcaaataaaagagagtgatcaatggttagtgaaa |
35054516 |
T |
|
| Q |
211 |
ctcttgtagggtaggtcttagaattaaggcttctaagagaatcagtgaaagtttttgttattggagttgcattaagtggaggaatgtttgttaaaattgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35054515 |
ctcttgtagggtaggtcttagaattaaggcttctaagagaatcagtgaaagtttttgttattggagttgcattaagtggaggaatgtttgttaaaattgt |
35054416 |
T |
|
| Q |
311 |
tttagtataaggtggtattcctttgtaacgaagcgtagcaatcgaagaaagattgtcaaagccaataggtgcatccatgaaaggtgttattgctattaag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35054415 |
tttagtataaggtggtattcctttgtaacgaagcgtagcaatcgaagaaagattgtcaaagccaataggtgcatccatgaaaggtgttattgctattaag |
35054316 |
T |
|
| Q |
411 |
tatttgccaataggttggtttgcagttag |
439 |
Q |
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| T |
35054315 |
tatttgccaataggttggtttgcagttag |
35054287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 11 - 439
Target Start/End: Complemental strand, 35071457 - 35071029
Alignment:
| Q |
11 |
cataggtggtttagaaggaaaatcatcagtgaaaacacctttgatattataataatttgcttgaagaagtgatacagtaggcattaaaaatgtgatattg |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071457 |
cataggtggtttagaaggaaaatcatcagtgaaaacacctttgatattatagtaatttgcttgaagaagtgatacagtaggcattaaaaatgtgatattg |
35071358 |
T |
|
| Q |
111 |
tttatagcagacacaagcttgttatcagttatgcatgtatcacatggattaagtccaacagttattgcaaataaaagagagtgatcaatggttagtgaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071357 |
tttatagcagacacaagcttgttatcagttatgcatgtatcacatggattaagtccaacagttattgcaaataaaagagagtgatcaatggttagtgaaa |
35071258 |
T |
|
| Q |
211 |
ctcttgtagggtaggtcttagaattaaggcttctaagagaatcagtgaaagtttttgttattggagttgcattaagtggaggaatgtttgttaaaattgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071257 |
ctcttgtagggtaggtcttagaattaaggcttctaagagaatcagtgaaagtttttgttattggagttgcattaagtggaggaatgtttgttaaaattgt |
35071158 |
T |
|
| Q |
311 |
tttagtataaggtggtattcctttgtaacgaagcgtagcaatcgaagaaagattgtcaaagccaataggtgcatccatgaaaggtgttattgctattaag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35071157 |
tttagtataaggtggtattcctttgtaacgaagcgtagcaatcgaagaaagattgtcaaagccaataggtgcatccatgaaaggtgttattgctattaag |
35071058 |
T |
|
| Q |
411 |
tatttgccaataggttggtttgcagttag |
439 |
Q |
| |
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||||||||||||||||||||||||||||| |
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|
| T |
35071057 |
tatttgccaataggttggtttgcagttag |
35071029 |
T |
|
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