View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19738_high_6 (Length: 374)
Name: NF19738_high_6
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 21 - 360
Target Start/End: Complemental strand, 18845199 - 18844859
Alignment:
| Q |
21 |
taataattcatggaaacatgtatttataagagtcacggggatccaatatccatcacatgatttagaaatgcttacaaatcagtggt---caatgcaatgg |
117 |
Q |
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| T |
18845199 |
taataattcgtggaaacatgtatttataagagtcacggggatccaatatccatcacatgatttagaaatgcttacaaatcagtagtagtcaatgcaatgg |
18845100 |
T |
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| Q |
118 |
aaagaataagtcacgaatcaaatgtgcttttcttgtcttatacactttgtattggtagcttatagtattattttatcacattaaactattactaagtttt |
217 |
Q |
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| T |
18845099 |
aaagaataagtcacgaatcaaatgtgcttttcttgtcttatacactttgtattggtagcttatagtattattttatcacattaaactattactaagtttt |
18845000 |
T |
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| Q |
218 |
ggaatgcacgcacttaataataatagaatgaaaccaaatggataagacaatctataactggttgagatcttgcgttaatcaagg---attattattcatt |
314 |
Q |
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| T |
18844999 |
ggaatgcacgcacttaat---aatagaatgaaaccaaatggataagacaatctataactggttgagatcttgcgttaatcaaggattattattattcatt |
18844903 |
T |
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| Q |
315 |
gtgatgactaaaacacatcgataatttcacttatatatgtcggtca |
360 |
Q |
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| T |
18844902 |
gtgatgactaaa--acattgataatttcacttatatatgtcggtca |
18844859 |
T |
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