View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19738_low_1 (Length: 597)
Name: NF19738_low_1
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_low_1 |
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| [»] scaffold0989 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 249 - 571
Target Start/End: Original strand, 43147245 - 43147567
Alignment:
| Q |
249 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaagagaagttgtgtcaaacaatttttgaagaaagcaaactag |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147245 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaagagaagttgtgtcaaacaatttttgaagaaagcaaactag |
43147344 |
T |
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| Q |
349 |
gcaaggttggcaaaatagatgaaacggcatcaaaatatcctatatgaatcaagttgaatgatacaccatatttaaatagtattacatgtatgcaggacaa |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147345 |
gcaaggttggcaaaatagatgaaacggcatcaaaatatcctatacgaatcaagttgaatgatacaccatatttaaatagtattacatgtatgcaggacaa |
43147444 |
T |
|
| Q |
449 |
agaagtatgtaaaattctctcttaaagtgtgtaaaatattatgtaatgatacgatctagaactctctcttagaacctatacaaaggggagagcttgtcat |
548 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43147445 |
agaagtatgtaaaattctctcttaaagtgtgtaaaatattatgtaatgatacgatctagaactctctcttagaacctatacaaaggggagagcttgtcat |
43147544 |
T |
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| Q |
549 |
ttgtaaatcaaacatgtagaatg |
571 |
Q |
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||||||||||||||||||||||| |
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| T |
43147545 |
ttgtaaatcaaacatgtagaatg |
43147567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 43147010 - 43147104
Alignment:
| Q |
14 |
atgaatgaagttattataaaacaaatatagaaaagacgtataaaattacatagaagtcaactttactctgaactgtgttaccaaatttttgtgtt |
108 |
Q |
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| T |
43147010 |
atgaatgaagttattataaaacaaatatagaaaagacgtataaaattatatagaagtcaactttactctgaactgtgttaccaaatttttgtgtt |
43147104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 503 - 559
Target Start/End: Complemental strand, 26947086 - 26947030
Alignment:
| Q |
503 |
tctagaactctctcttagaacctatacaaaggggagagcttgtcatttgtaaatcaa |
559 |
Q |
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|||||||||||| ||| || |||||| |||||||||||||||||||| ||||||||| |
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| T |
26947086 |
tctagaactctcccttggagcctataaaaaggggagagcttgtcattagtaaatcaa |
26947030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 249 - 420
Target Start/End: Original strand, 39362723 - 39362893
Alignment:
| Q |
249 |
agttgagtgcattatgggagtgtttggcccagcttattgccgacattttctactccttaagagaagttgtgtcaaacaatttttgaagaaagcaaactag |
348 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||| || ||||||||||||||||||| | ||| |
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| T |
39362723 |
agttgagtgcattatgggagtgtttggcccagcttattgctgac-ttttctagtccttaagagaagttgtgccatacaatttttgaagaaagcacagtag |
39362821 |
T |
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| Q |
349 |
gcaaggttggcaaaatagatgaaacggcatcaaaatatcctatatgaatcaagttgaatgatacaccatatt |
420 |
Q |
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| T |
39362822 |
gcaaggttggcaaaatagatgaaacggcatcaaaatatcctatatgaatcaagttgaatgatgcaccatatt |
39362893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 39362573 - 39362631
Alignment:
| Q |
16 |
gaatgaagttattataaaacaaatatagaaaagacgtataaaattacatagaagtcaac |
74 |
Q |
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|||||||||||| || ||||||||||||||||||||| ||||| || |||||||||||| |
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| T |
39362573 |
gaatgaagttatcatgaaacaaatatagaaaagacgtgtaaaactaaatagaagtcaac |
39362631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 503 - 555
Target Start/End: Original strand, 12074251 - 12074303
Alignment:
| Q |
503 |
tctagaactctctcttagaacctatacaaaggggagagcttgtcatttgtaaa |
555 |
Q |
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|||||||||||||||| | |||||| ||| |||||||||||||||||||||| |
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| T |
12074251 |
tctagaactctctcttgaagcctataaaaatgggagagcttgtcatttgtaaa |
12074303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 503 - 559
Target Start/End: Complemental strand, 4892272 - 4892216
Alignment:
| Q |
503 |
tctagaactctctcttagaacctatacaaaggggagagcttgtcatttgtaaatcaa |
559 |
Q |
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|||||||||||| |||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
4892272 |
tctagaactctcccttagagcctataaaaaggggagagcttgtcatttgtaaatcaa |
4892216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 505 - 559
Target Start/End: Complemental strand, 4872450 - 4872396
Alignment:
| Q |
505 |
tagaactctctcttagaacctatacaaaggggagagcttgtcatttgtaaatcaa |
559 |
Q |
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| T |
4872450 |
tagaactctcccttggagcctataaaaaggggagagcttgtcatttgtaaatcaa |
4872396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 503 - 559
Target Start/End: Original strand, 32238586 - 32238642
Alignment:
| Q |
503 |
tctagaactctctcttagaacctatacaaaggggagagcttgtcatttgtaaatcaa |
559 |
Q |
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|||||||||||| ||| || |||||| |||||||||||||||||||||||||||||| |
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| T |
32238586 |
tctagaactctcccttggagcctataaaaaggggagagcttgtcatttgtaaatcaa |
32238642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0989 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0989
Description:
Target: scaffold0989; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 503 - 559
Target Start/End: Complemental strand, 1261 - 1205
Alignment:
| Q |
503 |
tctagaactctctcttagaacctatacaaaggggagagcttgtcatttgtaaatcaa |
559 |
Q |
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||||||| |||| ||| || |||||| || ||||||||| ||||||||||||||||| |
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| T |
1261 |
tctagaaatctcccttggagcctataaaacggggagagcgtgtcatttgtaaatcaa |
1205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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