View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19738_low_10 (Length: 344)
Name: NF19738_low_10
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 123 - 330
Target Start/End: Original strand, 27446226 - 27446432
Alignment:
| Q |
123 |
aaattaaaggataaaatataatttaaatctttcaaacataagaaatgtaaagtatcacaatctccttttcttttttctacattaggcatgtaatgattat |
222 |
Q |
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| T |
27446226 |
aaattaaaggataaaatataatttaa-tctttcaaacataagaaatgtaaaatatcacaatttccttttcttttttctacattaggcatgtaatgattat |
27446324 |
T |
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| Q |
223 |
tgatggaggaacaggtctggccattgtattattttgcacgctctaaagatctcacacacattcacaaacaaactttcttaatcaccttttttctgatttg |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27446325 |
tgatggaggaacaggtctggccattgtattattttgcacgctctaaagatctcacacacattcacaaacaaactttcttaatcaccttttttctgatttg |
27446424 |
T |
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| Q |
323 |
tactatct |
330 |
Q |
| |
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|||||||| |
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| T |
27446425 |
tactatct |
27446432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 12 - 125
Target Start/End: Original strand, 27445875 - 27445988
Alignment:
| Q |
12 |
caaaggatgtgagattcactttctttgttatagacggcaaaccttcatattctattatccttggatgagaccggatacataccagtgaatgtgtaacttc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27445875 |
caaaggatgtgagattcactttctttgttatagacggcaaaccttcatattctattattcttggctgagaccggatacataccagtgaatgtgtaacttc |
27445974 |
T |
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| Q |
112 |
tacactccaccaaa |
125 |
Q |
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| T |
27445975 |
tacacttcaccaaa |
27445988 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 125
Target Start/End: Original strand, 46305598 - 46305692
Alignment:
| Q |
30 |
ctttctttgttatagacggcaaaccttcatattctattatccttggatgagaccggatacataccagtgaatgtgtaacttctacactccaccaaa |
125 |
Q |
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| T |
46305598 |
ctttctttgttatagacggccaaccttcatactctatcttccttgggagagattggatacatagcaatgaatgtgt-acttctacactccaccaaa |
46305692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 125
Target Start/End: Original strand, 7038 - 7079
Alignment:
| Q |
84 |
ggatacataccagtgaatgtgtaacttctacactccaccaaa |
125 |
Q |
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| T |
7038 |
ggatacataccagtgaatgtgtagctgctacacttcaccaaa |
7079 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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