View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19738_low_11 (Length: 340)
Name: NF19738_low_11
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19738_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 26374907 - 26375177
Alignment:
| Q |
18 |
acgttcatcttcttctttgaacaaaagttgaagatcgatcggttactattcggttctagatctatggatctgnnnnnnnatttgagatttagggtttaga |
117 |
Q |
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| T |
26374907 |
acgttcatcttcttctttgaacaaaagttgaagatcgatcggttactattcggttctagatctatggatctgtttttttatttgagatttagggtttaga |
26375006 |
T |
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| Q |
118 |
tctgattttgtta-tgttttgtgcagatcattaacgatcgtgaaactggacgatcaagaggttttggatttgtgacattcgctaacgagaaatccatgaa |
216 |
Q |
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| T |
26375007 |
tctgattttgtttgtgttttgtgcagatcattaacgatcgtgaaactggacgatcaagaggttttggatttgtgacattcgctaacgagaaatccatgaa |
26375106 |
T |
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| Q |
217 |
cgatgccattgaagcaatgaacggtcaggatttggacggacgtaacatcactgtgaaccaagctcagagcc |
287 |
Q |
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| T |
26375107 |
cgatgccattgaagcaatgaacggtcaggatttggacggacgtaacatcactgtgaaccaagctcagagcc |
26375177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 133 - 287
Target Start/End: Original strand, 26419320 - 26419474
Alignment:
| Q |
133 |
ttttgtgcagatcattaacgatcgtgaaactggacgatcaagaggttttggatttgtgacattcgctaacgagaaatccatgaacgatgccattgaagca |
232 |
Q |
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| T |
26419320 |
ttttgtgcagattatcaatgatcgtgaaactggaagatccagaggttttggatttgtgacatttgctgatgagaaatcgatgagagatgctattgaaggg |
26419419 |
T |
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| Q |
233 |
atgaacggtcaggatttggacggacgtaacatcactgtgaaccaagctcagagcc |
287 |
Q |
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| T |
26419420 |
atgaacggtcaggatatggatggaaggaacattactgttaatgaggctcagagcc |
26419474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 146 - 247
Target Start/End: Original strand, 26402088 - 26402189
Alignment:
| Q |
146 |
attaacgatcgtgaaactggacgatcaagaggttttggatttgtgacattcgctaacgagaaatccatgaacgatgccattgaagcaatgaacggtcagg |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||| ||||| ||||| | ||||||||||||| |
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| T |
26402088 |
attaacgatcgtgaaactggacgatcaagaggttttggttttgtgacattcgctgaggagaaatcgatgagagatgcaattgaggagatgaacggtcagg |
26402187 |
T |
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| Q |
246 |
at |
247 |
Q |
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|| |
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| T |
26402188 |
at |
26402189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 72
Target Start/End: Original strand, 26401949 - 26402003
Alignment:
| Q |
18 |
acgttcatcttcttctttgaacaaaagttgaagatcgatcggttactattcggtt |
72 |
Q |
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| T |
26401949 |
acgttcatcttcatcttttaacaaaaggagaagatcgatcggttactattcggtt |
26402003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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