View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19738_low_12 (Length: 335)

Name: NF19738_low_12
Description: NF19738
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19738_low_12
NF19738_low_12
[»] chr1 (5 HSPs)
chr1 (1-316)||(27036201-27036517)
chr1 (183-335)||(21808945-21809098)
chr1 (117-211)||(13309638-13309733)
chr1 (180-324)||(21460580-21460724)
chr1 (181-324)||(41357340-41357484)
[»] chr2 (9 HSPs)
chr2 (1-322)||(22170305-22170625)
chr2 (1-240)||(29215964-29216204)
chr2 (1-195)||(20631586-20631781)
chr2 (4-197)||(9892488-9892682)
chr2 (234-325)||(29216238-29216329)
chr2 (244-325)||(29329547-29329628)
chr2 (108-264)||(17377854-17378006)
chr2 (225-335)||(20382478-20382588)
chr2 (1-62)||(12102306-12102367)
[»] chr8 (11 HSPs)
chr8 (1-253)||(23594832-23595084)
chr8 (1-253)||(23603754-23604006)
chr8 (1-243)||(21592631-21592874)
chr8 (1-195)||(14412805-14413000)
chr8 (9-273)||(29820611-29820877)
chr8 (2-229)||(10568602-10568830)
chr8 (108-269)||(17274315-17274477)
chr8 (102-277)||(6001035-6001212)
chr8 (6-229)||(45269093-45269317)
chr8 (181-324)||(19495299-19495443)
chr8 (289-322)||(21592885-21592918)
[»] scaffold0437 (1 HSPs)
scaffold0437 (2-269)||(14558-14824)
[»] scaffold0363 (1 HSPs)
scaffold0363 (1-195)||(5711-5906)
[»] chr6 (11 HSPs)
chr6 (1-195)||(15130163-15130358)
chr6 (1-135)||(27990317-27990451)
chr6 (108-201)||(3056554-3056648)
chr6 (20-265)||(14373883-14374129)
chr6 (76-236)||(3547053-3547214)
chr6 (1-269)||(18307026-18307305)
chr6 (180-277)||(24353482-24353580)
chr6 (1-152)||(33313754-33313914)
chr6 (180-269)||(9697158-9697248)
chr6 (1-56)||(8461452-8461507)
chr6 (286-322)||(34338436-34338472)
[»] chr4 (10 HSPs)
chr4 (1-335)||(10691740-10692075)
chr4 (1-335)||(10905506-10905841)
chr4 (2-215)||(39407091-39407305)
chr4 (183-335)||(1928759-1928912)
chr4 (20-196)||(8667397-8667574)
chr4 (19-275)||(33040893-33041140)
chr4 (188-269)||(44673985-44674066)
chr4 (1-56)||(18233751-18233806)
chr4 (1-56)||(39914298-39914353)
chr4 (117-212)||(7189711-7189807)
[»] chr5 (8 HSPs)
chr5 (1-135)||(39324740-39324874)
chr5 (183-335)||(21898205-21898358)
chr5 (168-334)||(35341440-35341607)
chr5 (1-238)||(5781428-5781667)
chr5 (1-195)||(11725139-11725334)
chr5 (181-243)||(29998821-29998883)
chr5 (1-56)||(35341254-35341309)
chr5 (56-197)||(5784859-5785001)
[»] chr7 (8 HSPs)
chr7 (1-194)||(3728093-3728281)
chr7 (21-258)||(28779780-28780017)
chr7 (20-269)||(24573981-24574231)
chr7 (6-229)||(14073385-14073609)
chr7 (6-229)||(14383413-14383637)
chr7 (273-329)||(3728035-3728091)
chr7 (108-196)||(9411509-9411598)
chr7 (8-277)||(11295663-11295927)
[»] scaffold0063 (2 HSPs)
scaffold0063 (53-197)||(63137-63282)
scaffold0063 (1-57)||(60785-60841)
[»] chr3 (7 HSPs)
chr3 (2-269)||(19826712-19826981)
chr3 (20-264)||(2928880-2929126)
chr3 (20-269)||(51661198-51661448)
chr3 (6-229)||(5813821-5814044)
chr3 (1-56)||(3581015-3581070)
chr3 (210-324)||(14678346-14678461)
chr3 (1-56)||(47166473-47166528)
[»] scaffold0281 (1 HSPs)
scaffold0281 (168-335)||(6840-7008)
[»] scaffold0216 (1 HSPs)
scaffold0216 (168-307)||(15629-15769)
[»] scaffold0012 (2 HSPs)
scaffold0012 (22-268)||(103264-103511)
scaffold0012 (117-335)||(59845-60065)
[»] scaffold0015 (1 HSPs)
scaffold0015 (6-258)||(2345-2599)
[»] scaffold0265 (1 HSPs)
scaffold0265 (183-335)||(23711-23864)
[»] scaffold0607 (2 HSPs)
scaffold0607 (23-229)||(566-773)
scaffold0607 (6-216)||(6515-6723)
[»] scaffold0770 (1 HSPs)
scaffold0770 (183-308)||(6060-6186)
[»] scaffold0093 (1 HSPs)
scaffold0093 (76-335)||(11701-11962)
[»] scaffold0029 (1 HSPs)
scaffold0029 (183-308)||(104358-104484)
[»] scaffold0061 (1 HSPs)
scaffold0061 (207-335)||(53866-53995)
[»] scaffold0017 (1 HSPs)
scaffold0017 (207-335)||(144639-144768)
[»] scaffold0125 (1 HSPs)
scaffold0125 (180-324)||(39205-39350)


Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 27036517 - 27036201
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||||| || ||||||||||||    
T  27036517 tggtttagatttgtgggcaagagtccgagaatatgatgaaagatcagcagctgaagacttcgtgcatgttctaacaagaaaacataaacagaaactcaag 27036418  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagaggtat 199  Q
    |||||| |||||||||||||| |||||| |||||| | ||| |||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||    
T  27036417 gtacaacaagtcttagcaaagtagcctaataaatctcgtgctcggggtgacaatcattcgactgatcgatgaatttcctctattggaatgttagaggtat 27036318  T
Q  200 cagtaactctgatactcgggctgctttaaaaatttatatatgtctcacaaacctattctaatttttattgcggaaccggtggttaattttgcacaaattc 299  Q
    |||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27036317 cagtaactctgatacttggattgctttaaaaatttatatatgtctcacaaacctattctaatttttattgcggaaccgatggttaattttgcacaaattc 27036218  T
Q  300 ctgcttggtattggcct 316  Q
    |||||||||||||||||    
T  27036217 ctgcttggtattggcct 27036201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 335
Target Start/End: Original strand, 21808945 - 21809098
Alignment:
Q  183 tggaatgttagaggtatcagtaactctgatactcgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccggtgg 281  Q
    ||||||||| |||||||  |||| ||||| |||||  |||||||||||| ||||| | | || ||||||||   |||||||||| | ||||||||  |||    
T  21808945 tggaatgttcgaggtattggtaattctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccctctctaatttttgtggcggaaccaatgg 21809044  T
Q  282 ttaattttgcacaaattcctgcttggtattggccttctataggtgtttctaaat 335  Q
    |||||||||| |||||||||| ||||||||||| ||| ||||| || |||||||    
T  21809045 ttaattttgctcaaattcctgattggtattggcattccataggcgtatctaaat 21809098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 211
Target Start/End: Complemental strand, 13309733 - 13309638
Alignment:
Q  117 caaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatcagtaactctga 211  Q
    ||||||||||||| || |||| ||| |||||||||||||| ||  ||||||| ||||| |||| ||||||||||||||||||||| ||||||||||    
T  13309733 caaagcagcctacaaagtcccgtgcacggggtgacaatcaatccactgatcactgaatatcctctattggaatgttagaggtatcggtaactctga 13309638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 180 - 324
Target Start/End: Original strand, 21460580 - 21460724
Alignment:
Q  180 tattggaatgttagaggtatcagtaactctgatactcgggctgctttaaaaatttatatatgtctcacaaacctattctaatttttattgcggaaccggt 279  Q
    |||||||||||| | |||||  |||| || |||||||||  |||||||||||||||| | |||| || ||||| | | | |||||| | ||||||||  |    
T  21460580 tattggaatgttcgcggtattggtaattccgatactcggcttgctttaaaaatttatttttgtcgcataaaccaactattatttttgtggcggaacctat 21460679  T
Q  280 ggttaattttgcacaaattcctgcttggtattggccttctatagg 324  Q
     ||||  ||||||||||||||| |||||||||||||||| |||||    
T  21460680 agttagctttgcacaaattccttcttggtattggccttcgatagg 21460724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 324
Target Start/End: Complemental strand, 41357484 - 41357340
Alignment:
Q  181 attggaatgttagaggtatcagtaactctgatactcgggctgcttta-aaaatttatatatgtctcacaaacctattctaatttttattgcggaaccggt 279  Q
    |||||||||||||||||||  |||||||||| ||||||  ||||||| ||||||||| | | || |||||||||| | | |||||| | ||||||||  |    
T  41357484 attggaatgttagaggtattggtaactctgacactcggcttgctttaaaaaatttatttttatcccacaaacctactattatttttgtggcggaaccaat 41357385  T
Q  280 ggttaattttgcacaaattcctgcttggtattggccttctatagg 324  Q
    | |||  |||||||| |||||  | |||||||||| |||||||||    
T  41357384 gtttagctttgcacatattccatcctggtattggcattctatagg 41357340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 22170625 - 22170305
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  22170625 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttctaacaagaaaacagaaacagaaactcaag 22170526  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtat 199  Q
    || ||| ||||||||||||||||||||| |||||| | ||||   |||||||||||||||  |||||| |||||||||| ||||||||||||||||||||    
T  22170525 gttcaacaagtcttagcaaagcagcctaataaatctcgtgcctttggtgacaatcattcgagtgatcagtgaatttcctctattggaatgttagaggtat 22170426  T
Q  200 cagtaactctgatactcgggctgctttaaaaatttatatatgtctcacaaacctattctaatttttattgcggaaccggtggttaattttgcacaaattc 299  Q
    |||||||| ||||||| ||  |||||||||||||||||||||  |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||     
T  22170425 cagtaactttgatacttggattgctttaaaaatttatatatg--tcacaaacctattctaatttttattgtggaaccgatggttaattttgcacaaatta 22170328  T
Q  300 ctgcttggtattggccttctata 322  Q
    |||||||||||||||||||||||    
T  22170327 ctgcttggtattggccttctata 22170305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 29215964 - 29216204
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| |    
T  29215964 tggtttagatttgtgggcaagagtccgagaaaatgatgaaagatcagcagctgaagacttcatgcctgttctaacaagaaaacagaaacagaaactcagg 29216063  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagaggtat 199  Q
    |||||| |||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||| ||||| || || |||| |||||||||||||||    
T  29216064 gtacaacaagtcttagcaaagcagcctactaaatcccgtgccctgggtgacaatcattcgactgatcaatgaaatttctctattagaatgttagaggtat 29216163  T
Q  200 cagtaactctgatactcgggctgctttaaaaatttatatat 240  Q
    |||||||||||||||||||  ||||||| | || |||||||    
T  29216164 cagtaactctgatactcggattgctttatatatatatatat 29216204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 20631586 - 20631781
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||  |||||||||||    
T  20631586 tggtttagatttgtgggcaagatttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttctaacaagaaaacagaaatagaaactcaag 20631685  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagag 195  Q
    |||||| ||||||||||||||||||||| |||||||| | ||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||    
T  20631686 gtacaacaagtcttagcaaagcagcctaataaatcccgtacccggggtgacaatcattcgagtgatcaatgaatttcctctattggaatgttagag 20631781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 4 - 197
Target Start/End: Complemental strand, 9892682 - 9892488
Alignment:
Q  4 tttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggta 103  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| || ||||||||||||    
T  9892682 tttagatttgtaggcaagagtccgagaatatgatgaaagatcagcagctgaagactttatgcctgttctaacaagaaaacagaaacaaaaactcaaggta 9892583  T
Q  104 caaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagaggt 197  Q
    ||  ||||||||||||||||||||| |||||||| || || |||||||||||||||| |||||| ||||||||||| ||||||||||||||||||    
T  9892582 cagcaagtcttagcaaagcagcctattaaatcccgtgtccagggtgacaatcattcgactgatcaatgaatttcctctattggaatgttagaggt 9892488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 234 - 325
Target Start/End: Original strand, 29216238 - 29216329
Alignment:
Q  234 tatatatgtctcacaaacctattctaatttttattgcggaaccggtggttaattttgcacaaattcctgcttggtattggccttctataggt 325  Q
    ||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  29216238 tatatatatctcacaaacctattctaatttttattgtggaaccgatggttaattttgcacaaattcatgcttggtattggccttctataggt 29216329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 244 - 325
Target Start/End: Original strand, 29329547 - 29329628
Alignment:
Q  244 tcacaaacctattctaatttttattgcggaaccggtggttaattttgcacaaattcctgcttggtattggccttctataggt 325  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  29329547 tcacaaacctattctaatttttattgtggaaccgatggttaattttgcacaaattcatgcttggtattggccttctataggt 29329628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 108 - 264
Target Start/End: Complemental strand, 17378006 - 17377854
Alignment:
Q  108 aagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatcagtaac 206  Q
    ||||||| |||||||||||| | ||| ||| ||| ||||||||||||||| || ||| ||| |||||||||| ||||||||||||||||||||| |        
T  17378006 aagtcttggcaaagcagcctcccaaaacccgtgctcggggtgacaatcatacgactgctcaatgaatttcctctattggaatgttagaggtatcgg---- 17377911  T
Q  207 tctgatactcgggctgctttaaa-aatttatatatgtctcacaaacctattctaatttt 264  Q
      ||||||||||  ||||||||| |||||||| |||||||| |||| | ||||||||||    
T  17377910 --tgatactcggattgctttaaagaatttatacatgtctcataaacttgttctaatttt 17377854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 225 - 335
Target Start/End: Original strand, 20382478 - 20382588
Alignment:
Q  225 ttaaaaatttatatatgtctcacaaacctattctaatttttattgcggaaccggtggttaattttgcacaaattcctgcttggtattggccttctatagg 324  Q
    |||||||||||||| ||||||||||||| ||  |||||||||||||||| ||  || | |||||||| ||| | ||| |||||| |||||||||||||||    
T  20382478 ttaaaaatttatatttgtctcacaaaccgatgttaatttttattgcggagccaatgataaattttgcccaagtcccttcttggttttggccttctatagg 20382577  T
Q  325 tgtttctaaat 335  Q
     ||||| ||||    
T  20382578 ggtttcgaaat 20382588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 12102306 - 12102367
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttca 62  Q
    ||||||||||||||||| | |||| ||  |||||||||| |||||||| | |||||||||||    
T  12102306 tggtttagatttgtgggaacgagtgcgccaatatgatgagagatcagctgttgaagacttca 12102367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 209; Significance: 1e-114; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 23594832 - 23595084
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |    
T  23594832 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcaactaaagacttcatgcctgttttaataagaaaacagaagcagaaactcagg 23594931  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatcatgaatttcctatattggaatgttagaggtatc 200  Q
    ||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  23594932 gtagaaaaagtcttagcaaagcagcctagtaaatcccgtgcccggggtgacaatcattcgactgatcatgaatttcctataatggaatgttagaggtatc 23595031  T
Q  201 agtaactctgatactcgggctgctttaaaaatttatatatgtctcacaaacct 253  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  23595032 agtaactctgatactcggattgctttaaaaatttatatatttctcacaaacct 23595084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 253
Target Start/End: Original strand, 23603754 - 23604006
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |    
T  23603754 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcaactaaagacttcatgcctgttttaataagaaaacagaagcagaaactcagg 23603853  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatcatgaatttcctatattggaatgttagaggtatc 200  Q
    ||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  23603854 gtagaaaaagtcttagcaaagcagcctagtaaatcccgtgcccggggtgacaatcattcgactgatcatgaatttcctataatggaatgttagaggtatc 23603953  T
Q  201 agtaactctgatactcgggctgctttaaaaatttatatatgtctcacaaacct 253  Q
    ||||||||||||||||||  |||||||||||||||||||| ||||||||||||    
T  23603954 agtaactctgatactcggattgctttaaaaatttatatatttctcacaaacct 23604006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 21592631 - 21592874
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  21592631 tggtttagatttgtgggcaagagtccgagaatatgatgaaagatcagcagctgaagacttcatgcctgttctaacaagaaaacagaaacagaaactcaag 21592730  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagaggtat 199  Q
    |||||| ||||||||| ||||||||||| |||||| | |||||||||||||||||||| |  ||||| ||||||||||| ||||||||||||||||||||    
T  21592731 gtacaacaagtcttagtaaagcagcctaataaatctcgtgcccggggtgacaatcatttgagtgatcaatgaatttcctctattggaatgttagaggtat 21592830  T
Q  200 cagtaactctgatactcgggctgctttaaaaatttatatatgtc 243  Q
    |||||||| ||||||| ||  |||||||||||||||||||||||    
T  21592831 cagtaactttgatacttggattgctttaaaaatttatatatgtc 21592874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 14412805 - 14413000
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| || |||||||||    
T  14412805 tggtttagatttgtgggcaagagtccgagaatatgatgaaagatcagcagctgaagacttcatgcatgttctaacaagaaaacagaaacaaaaactcaag 14412904  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagag 195  Q
    |||||| ||||||||||||||||||||| |||||||| | ||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||    
T  14412905 gtacaacaagtcttagcaaagcagcctaataaatcccgtacccggggtgacaatcattcgagtgatcaatgaatttcctgtattggaatgttagag 14413000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 9 - 273
Target Start/End: Original strand, 29820611 - 29820877
Alignment:
Q  9 atttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaaa 108  Q
    |||| |||| ||||||||| |||||||||||||| || ||  |||||||||||| |||  |  | | ||| || ||||| |||||| | ||  | ||| |    
T  29820611 atttatgggaaagagttcgggaatatgatgaaaggtcggctactgaagacttcacgccgatccttacaaggaagcagaaacagaaaattaaattgcaaca 29820710  T
Q  109 agtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatcagtaact 207  Q
    |||||| |||||||| ||| ||||| ||| |||||||||||| ||| ||  | ||| ||| ||||||| || |||| |||| |||||||||||||||| |    
T  29820711 agtcttggcaaagcaacctcctaaaacccgtgcccggggtgataattatcagactgctcaatgaatttactctattagaatattagaggtatcagtaatt 29820810  T
Q  208 ctgatactcgggctgctttaaa-aatttatatatgtctcacaaacctattctaatttttattgcgga 273  Q
    |||||||||||  ||||||||| ||||||||||||||||| |||||| |||||||||||||| ||||    
T  29820811 ctgatactcggattgctttaaagaatttatatatgtctcataaacctgttctaatttttattacgga 29820877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 10568830 - 10568602
Alignment:
Q  2 ggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaagg 101  Q
    |||||||||||||||   |||||||| |||||||||||| ||||||| |||||||||||||  || ||  ||| ||| |||||||| |||||| | || |    
T  10568830 ggtttagatttgtggcacagagttcgtgaatatgatgaacgatcagctgctgaagacttcacaccggtcctaacaaggaaacagaaacagaaaattaaag 10568731  T
Q  102 tacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgat-catgaatttcctatattggaatgttagaggtatc 200  Q
    ||||| | ||||||||||||||||| |||||| ||| | | |||||||  |||||  |  ||| | ||||||||| || |||||||||||||||||||||    
T  10568730 tacaacatgtcttagcaaagcagcccactaaaacccgttctcggggtggtaatcacccaactgctccatgaattttctctattggaatgttagaggtatc 10568631  T
Q  201 agtaactctgatactcgggctgctttaaa 229  Q
     |||| |||||||||| |  |||||||||    
T  10568630 ggtaattctgatactcagattgctttaaa 10568602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 108 - 269
Target Start/End: Original strand, 17274315 - 17274477
Alignment:
Q  108 aagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatcagtaac 206  Q
    ||||||| || ||||||||  ||||| ||| |||||||||||| ||||||  | ||| ||| ||||||||||  |||||||||||||||||||||||||     
T  17274315 aagtcttggctaagcagccccctaaaacccgtgcccggggtgataatcatcagactgctcaatgaatttcctccattggaatgttagaggtatcagtaat 17274414  T
Q  207 tctgatactcgggctgctttaaaaatttatatatgtctcacaaacctattctaatttttattg 269  Q
    | ||||||||||  ||||||||||||||||| |||||||| ||| || |||| ||||||||||    
T  17274415 tatgatactcggattgctttaaaaatttatacatgtctcaaaaaactgttctgatttttattg 17274477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 277
Target Start/End: Original strand, 6001035 - 6001212
Alignment:
Q  102 tacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatc 200  Q
    ||||| |||||||  | ||||||||||||||| | | ||| ||||||||   ||||||| ||||||| | || || || |||||||||||||||||||||    
T  6001035 tacaacaagtcttgccgaagcagcctactaaaactcgtgctcggggtgatcctcattcgactgatcaataaactttctctattggaatgttagaggtatc 6001134  T
Q  201 agtaactctgatactcgggctgcttt-aaaaatttatatatgtctcacaaacctattctaatttttattgcggaaccg 277  Q
     |||| |||||||||| |  |||||| ||||| |||||||||||||| |||||||| || |||||||||| |||||||    
T  6001135 ggtaattctgatactcagattgctttaaaaaaattatatatgtctcataaacctatgcttatttttattgtggaaccg 6001212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 45269317 - 45269093
Alignment:
Q  6 tagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtaca 105  Q
    |||||||||||   |||||| | ||||||||||||  |||||| |||||||||||||  || ||  ||| ||| |||||||| |||||| | || |||||    
T  45269317 tagatttgtggcacagagtttgtgaatatgatgaacaatcagctgctgaagacttcacaccggtcctaacaaggaaacagaaacagaaaattaaagtaca 45269218  T
Q  106 aaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctg-atcatgaatttcctatattggaatgttagaggtatcagta 204  Q
    | | |||||||||||||| ||||||||| ||| | | |||||||  |||||| |  |||  |||||||||| || ||||||||||||||||||||  |||    
T  45269217 acatgtcttagcaaagcatcctactaaaacccgttctcggggtggtaatcatccaactgcttcatgaattttctctattggaatgttagaggtataggta 45269118  T
Q  205 actctgatactcgggctgctttaaa 229  Q
    | |||||||||| |  |||||||||    
T  45269117 attctgatactcagattgctttaaa 45269093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 324
Target Start/End: Original strand, 19495299 - 19495443
Alignment:
Q  181 attggaatgttagaggtatcagtaactctgatactcgggctgcttt-aaaaatttatatatgtctcacaaacctattctaatttttattgcggaaccggt 279  Q
    |||||||||||||||||||  |||||||||| ||||||  |||||| |||||||||| | | || |||||||||| | | |||||| | ||||||||  |    
T  19495299 attggaatgttagaggtattggtaactctgacactcggcttgctttaaaaaatttatttttatcccacaaacctactattatttttgtggcggaaccaat 19495398  T
Q  280 ggttaattttgcacaaattcctgcttggtattggccttctatagg 324  Q
    | |||  |||||||| |||||  | |||||||||| |||||||||    
T  19495399 gtttagctttgcacatattccatcctggtattggcattctatagg 19495443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 289 - 322
Target Start/End: Original strand, 21592885 - 21592918
Alignment:
Q  289 tgcacaaattcctgcttggtattggccttctata 322  Q
    ||||||||||||||||||||||||||||||||||    
T  21592885 tgcacaaattcctgcttggtattggccttctata 21592918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0437 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: scaffold0437
Description:

Target: scaffold0437; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 14824 - 14558
Alignment:
Q  2 ggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaagg 101  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||    
T  14824 ggttaagatttgtgggcaagagtccgagaatatgatgaaagatcagcagctgaagacttcatgcctgttctaacaagaaaacagaaacagaaactcaagg 14725  T
Q  102 tacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatc 200  Q
    | ||| ||||||||||||||||||||| |||||| | ||||   |||||||||| ||||  |||||| |||||||||| |||||||||||||||||||||    
T  14724 ttcaacaagtcttagcaaagcagcctattaaatctcgtgcctttggtgacaatctttcgagtgatcattgaatttcctctattggaatgttagaggtatc 14625  T
Q  201 agtaactctgatactcgggctgctttaaaaatttatatatgtctcacaaacctattctaatttttattg 269  Q
    ||||||| ||||||| ||  |||||||||||||||||||||  ||||||| ||||||||||||||||||    
T  14624 agtaactttgatacttggattgctttaaaaatttatatatg--tcacaaaactattctaatttttattg 14558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 136; Significance: 6e-71; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 5906 - 5711
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||| || |||||||||    
T  5906 tggtttagatttgtgggcaagagtccgagaatatgatgaaagatcagcagctgaagacttcatgcatgttctaacaagaaaacagaaacaaaaactcaag 5807  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagag 195  Q
    |||||| ||||||||||||||||||||| |||||||| | ||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||    
T  5806 gtacaacaagtcttagcaaagcagcctaataaatcccgtacccggggtgacaatcattcgagtgatcaatgaatttcctgtattggaatgttagag 5711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 136; Significance: 6e-71; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 15130358 - 15130163
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| || |||||||||    
T  15130358 tggtttagatttgtggggaagagtccgagaatatgatgaaagatcagcagctgaagacttcatgcctgttctaacaagaaaacagaaacataaactcaag 15130259  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagag 195  Q
    |||||| ||||||||||||||||||||| |||||||| | ||||||||||||||||||||  ||||| ||||||||||| ||||||||||||||||    
T  15130258 gtacaacaagtcttagcaaagcagcctaataaatcccgtacccggggtgacaatcattcgagtgatcaatgaatttcctctattggaatgttagag 15130163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 135
Target Start/End: Original strand, 27990317 - 27990451
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    ||||||| |||||||||||| |||  ||||||||||||||||||||||||||| |||||||||||||||| ||| |||| |||| ||  |||||||||||    
T  27990317 tggtttatatttgtgggcaacagtctgagaatatgatgaaagatcagcagctgtagacttcatgcctgttctaacaagacaacataaatagaaactcaag 27990416  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatc 135  Q
    |||||| |||||||||||||| |||||||| ||||    
T  27990417 gtacaacaagtcttagcaaagaagcctactgaatc 27990451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 108 - 201
Target Start/End: Original strand, 3056554 - 3056648
Alignment:
Q  108 aagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagaggtatca 201  Q
    ||||||| |||||||||||| ||||| ||| ||| ||||||||||||||| || ||| || ||||||||||| ||||||||||||||||||||||    
T  3056554 aagtcttggcaaagcagcctcctaaaacccgtgctcggggtgacaatcatacgactgctcaatgaatttcctctattggaatgttagaggtatca 3056648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 14374129 - 14373883
Alignment:
Q  20 agagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaaaagtcttagcaa 119  Q
    |||||||| |||||||||| ||| ||||| |||||||||||||   | ||  | | ||| || ||||| |||||| | || || ||| ||||||| || |    
T  14374129 agagttcgtgaatatgatgcaaggtcagctgctgaagacttcacatcggtccttacaaggaagcagaaacagaaaattaaagtgcaacaagtcttggcta 14374030  T
Q  120 agcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatcagtaactctgatactcgg 218  Q
    |||| ||  ||||| ||| ||| |||||||| ||||||    ||| ||| ||||||||||  |||||||||||||||||||| |||| | |||||||| |    
T  14374029 agcaaccccctaaaacccgtgctcggggtgataatcatcatactgctcaatgaatttcctccattggaatgttagaggtatcggtaattatgatactcag 14373930  T
Q  219 gctgctttaaaaatttatatatgtctcacaaacctattctaattttt 265  Q
      | |||||||||||||||||||||||| |||| | |||| ||||||    
T  14373929 atttctttaaaaatttatatatgtctcataaacttgttctgattttt 14373883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 3547214 - 3547053
Alignment:
Q  76 aagaaaacagaagcagaaactcaaggtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatt 174  Q
    |||||| |||||||| ||||| ||||| ||| | ||  |  ||||| ||||| ||||||||| ||| |||||||||||| | || |||||||| ||||||    
T  3547214 aagaaatcagaagcaaaaactgaaggtccaacatgttctttcaaagaagccttctaaatcccgtgcacggggtgacaataaatcctctgatcaatgaatt 3547115  T
Q  175 tcctatattggaatgttagaggtatcagtaactctgatactcgggctgctttaaaaatttat 236  Q
      || ||||||||| ||| ||||||| ||||||||||| |||||  ||||||||||||||||    
T  3547114 gtctctattggaatattaaaggtatcggtaactctgattctcggattgctttaaaaatttat 3547053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 18307305 - 18307026
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaa---------gacttcatgcctgttttaataagaaaacagaagcag 91  Q
    ||||||||||||||||| |||||| || |||||||||| ||||||||||||||||         | |||||||| |||| | | | |||| ||||| ||     
T  18307305 tggtttagatttgtgggaaagagtacgtgaatatgatgtaagatcagcagctgaagcacatgatggcttcatgcttgttcttacacgaaatcagaaacaa 18307206  T
Q  92 aaactcaaggtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgt 190  Q
    ||||| ||||||||| | || ||| | ||||||||| | ||||||| ||| |||||||||| | |  ||  ||  | || | ||| || ||||||||| |    
T  18307205 aaacttaaggtacaacacgttttatccaagcagccttccaaatcccgtgcacggggtgacactaacccgcatgcccaatcatttttctctattggaatat 18307106  T
Q  191 tagaggtatcagtaactctgatactcgggctgcttta-aaaatttatatatgtctcacaaacctattctaatttttattg 269  Q
    |||||||||| ||||||| ||| ||||   ||||||| |||| || |||||||||||||||||||| || || |||||||    
T  18307105 tagaggtatcggtaactcggatgctcgaattgctttacaaaacttttatatgtctcacaaacctatgcttatatttattg 18307026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 180 - 277
Target Start/End: Complemental strand, 24353580 - 24353482
Alignment:
Q  180 tattggaatgttagaggtatcagtaactctgatactcgggctgcttt-aaaaatttatatatgtctcacaaacctattctaatttttattgcggaaccg 277  Q
    ||||||||||||||||||||| |||| | ||||||||||  | |||| |||||||||| | ||||||| |||| ||| || ||||||||||||||||||    
T  24353580 tattggaatgttagaggtatcggtaattttgatactcggattactttaaaaaatttatctctgtctcataaacttatgcttatttttattgcggaaccg 24353482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 33313754 - 33313914
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaa---------gacttcatgcctgttttaataagaaaacagaagcag 91  Q
    ||||||||||||||||| |||||| || |||||||||| ||||||||||||||||         | ||||||||||||| | | | |||| ||||| ||     
T  33313754 tggtttagatttgtgggaaagagtacgtgaatatgatgcaagatcagcagctgaagcacctgatggcttcatgcctgttcttacacgaaatcagaaacaa 33313853  T
Q  92 aaactcaaggtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgaca 152  Q
    ||||| ||||||||| | || ||| | ||||||||| | ||||||| ||| ||||||||||    
T  33313854 aaacttaaggtacaacacgttttatccaagcagccttccaaatcccgtgcacggggtgaca 33313914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 269
Target Start/End: Complemental strand, 9697248 - 9697158
Alignment:
Q  180 tattggaatgttagaggtatcagtaactctgatactcgggctgcttta-aaaatttatatatgtctcacaaacctattctaatttttattg 269  Q
    ||||||||| ||||||||||| ||||||||||| ||||   ||||||| |||| || |||||||||||||||||||| || || |||||||    
T  9697248 tattggaatattagaggtatcggtaactctgatgctcgaattgctttacaaaacttttatatgtctcacaaacctatgcttatatttattg 9697158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 8461452 - 8461507
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaag 56  Q
    ||||||||||||||||| |||||||||||| |||||||   |||||||||||||||    
T  8461452 tggtttagatttgtgggaaagagttcgagagtatgatgctcgatcagcagctgaag 8461507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 286 - 322
Target Start/End: Complemental strand, 34338472 - 34338436
Alignment:
Q  286 ttttgcacaaattcctgcttggtattggccttctata 322  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  34338472 ttttgcacaaattcctacttggtattggccttatata 34338436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 10692075 - 10691740
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||   |||||||||||||| ||| | | ||||||||| || |||||||| ||     
T  10692075 tggtttagatttgtgggctagagttcgtgaatatgatgaaagatcagcaag-gaagacttcatgccggttcttacaagaaaacataaacagaaacttaaa 10691977  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtat 199  Q
    || ||| |||| ||||||| ||| ||| ||||| |   ||| ||||||||  |||  ||| ||||||| |||||||||| ||||||||||||||||||||    
T  10691976 gttcaacaagttttagcaacgcatccttctaaaacttgtgctcggggtgaacatctctcgactgatcaatgaatttcctctattggaatgttagaggtat 10691877  T
Q  200 cagtaactctgatactcgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccggtggttaattttgcacaaatt 298  Q
    | |||| ||| |||| |    ||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||  ||||||||||||||||||||    
T  10691876 cggtaattctaatacacaaattgctttaaaaaatttatatatgtctcacaaacctatgcttatttttattgcagaaccaatggttaattttgcacaaatt 10691777  T
Q  299 cctgcttggtattggccttctataggtgtttctaaat 335  Q
    |||| |||| |||||||  ||||| ||||||||||||    
T  10691776 cctgtttggaattggccgactataagtgtttctaaat 10691740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 10905841 - 10905506
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||   |||||||||||||| ||| | | ||||||||| || |||||||| ||     
T  10905841 tggtttagatttgtgggctagagttcgtgaatatgatgaaagatcagcaag-gaagacttcatgccggttcttacaagaaaacataaacagaaacttaaa 10905743  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtat 199  Q
    || ||| |||| ||||||| ||| ||| ||||| |   ||| ||||||||  |||  ||| ||||||| |||||||||| ||||||||||||||||||||    
T  10905742 gttcaacaagttttagcaacgcatccttctaaaacttgtgctcggggtgaacatctctcgactgatcaatgaatttcctctattggaatgttagaggtat 10905643  T
Q  200 cagtaactctgatactcgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccggtggttaattttgcacaaatt 298  Q
    | |||| ||| |||| |    ||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||  ||||||||||||||||||||    
T  10905642 cggtaattctaatacacaaattgctttaaaaaatttatatatgtctcacaaacctatgcttatttttattgcagaaccaatggttaattttgcacaaatt 10905543  T
Q  299 cctgcttggtattggccttctataggtgtttctaaat 335  Q
    |||| |||| |||||||  ||||| ||||||||||||    
T  10905542 cctgtttggaattggccgactataagtgtttctaaat 10905506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 2 - 215
Target Start/End: Complemental strand, 39407305 - 39407091
Alignment:
Q  2 ggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaagg 101  Q
    ||||||||||||||||  |||||||| ||||||||| || ||||||| |||||||||||||  || ||  ||| |||||||||||| |||||| | || |    
T  39407305 ggtttagatttgtgggacagagttcgtgaatatgataaacgatcagctgctgaagacttcacaccggtcctaacaagaaaacagaaacagaaaattaaag 39407206  T
Q  102 tacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgat-catgaatttcctatattggaatgttagaggtatc 200  Q
    ||||| | |||||||||||||||||||||||| ||| | | |||||||  |||||| |  ||| | ||||||||| ||  ||||||||||||||||||||    
T  39407205 tacaacaggtcttagcaaagcagcctactaaaacccgttctcggggtggtaatcatccaactgctccatgaattttctcaattggaatgttagaggtatc 39407106  T
Q  201 agtaactctgatact 215  Q
    ||||| |||||||||    
T  39407105 agtaattctgatact 39407091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 183 - 335
Target Start/End: Complemental strand, 1928912 - 1928759
Alignment:
Q  183 tggaatgttagaggtatcagtaactctgatactcgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccggtgg 281  Q
    ||||||||| |||||||  |||||||||| |||||  |||||||||||| ||||| | | || ||||||||   |||||||||| | | ||||||  |||    
T  1928912 tggaatgttcgaggtattggtaactctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccatctctaatttttgtggtggaaccaatgg 1928813  T
Q  282 ttaattttgcacaaattcctgcttggtattggccttctataggtgtttctaaat 335  Q
    |||||||||| |||||||||||||||||||||| ||| ||||| || |||||||    
T  1928812 ttaattttgctcaaattcctgcttggtattggcattccataggcgtatctaaat 1928759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 20 - 196
Target Start/End: Complemental strand, 8667574 - 8667397
Alignment:
Q  20 agagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaaaagtcttagcaa 119  Q
    |||||||| |||||||||| ||| |||||  |||||||||||| ||| ||  | | ||| || || || |||||| | || || ||| ||||||| ||||    
T  8667574 agagttcgtgaatatgatgcaaggtcagctactgaagacttcacgccggtccttacaaggaagcaaaaacagaaaattaaagttcaacaagtcttggcaa 8667475  T
Q  120 agcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagagg 196  Q
    |||| ||| ||||| | | ||| ||||||||||||||| |  ||| ||| |||||||||| |||||||||||||||||    
T  8667474 agcaacctcctaaaactcgtgctcggggtgacaatcatacaactgctcaatgaatttcctctattggaatgttagagg 8667397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 33041140 - 33040893
Alignment:
Q  19 aagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaaaagtcttagca 118  Q
    ||||||||| |||||||||||||| |||||   ||||||||||| | | ||  | | ||| || ||||| || ||| | ||  | ||| ||||||| |||    
T  33041140 aagagttcgtgaatatgatgaaaggtcagctattgaagacttcacgtcggtccttacaaggaagcagaaacaaaaaattaaattgcaacaagtcttggca 33041041  T
Q  119 aagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatcagtaactctgatactcg 217  Q
    ||||||||  || || ||| ||||| |||||| ||||||    ||| ||| ||||||| || ||||||||| |||||||||||||||| |||||||||||    
T  33041040 aagcagccccctgaaacccgtgcccagggtgataatcatcaaactgttcaatgaattttctctattggaattttagaggtatcagtaattctgatactcg 33040941  T
Q  218 ggctgctttaaaaatttatatatgtctcacaaacctattctaatttttattgcggaac 275  Q
    |      | |||||||||||||||||||| |     ||||||||||||||||||||||    
T  33040940 g-----ataaaaaatttatatatgtctcata-----attctaatttttattgcggaac 33040893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 269
Target Start/End: Complemental strand, 44674066 - 44673985
Alignment:
Q  188 tgttagaggtatcagtaactctgatactcgggctgctttaaaaatttatatatgtctcacaaacctattctaatttttattg 269  Q
    ||||||||||||| |||| | | ||| ||||  |||||||||||||||||||||||||| |||||| |||| | ||||||||    
T  44674066 tgttagaggtatcggtaattatcatattcggattgctttaaaaatttatatatgtctcaaaaacctgttctgaattttattg 44673985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 18233751 - 18233806
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaag 56  Q
    ||||||||||||||| | |||||| || |||||||||| |||||||||||||||||    
T  18233751 tggtttagatttgtgagaaagagtacgtgaatatgatgcaagatcagcagctgaag 18233806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 39914353 - 39914298
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaag 56  Q
    ||||||||||||||||| |||||| ||||| |||||||   |||||||||||||||    
T  39914353 tggtttagatttgtgggaaagagtccgagagtatgatgctcgatcagcagctgaag 39914298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 212
Target Start/End: Original strand, 7189711 - 7189807
Alignment:
Q  117 caaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatcagtaactctgat 212  Q
    ||||| ||||| ||||||||| ||| ||| |||||||| | ||  ||||||| ||||||  || ||||||||| ||||||||||| |||||| ||||    
T  7189711 caaagaagccttctaaatcccgtgcacggagtgacaataaatccactgatcaatgaattgtctctattggaatattagaggtatcggtaactttgat 7189807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 39324874 - 39324740
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  39324874 tggtttagatttgtgggcaagagtccgagaatatgatgaaagatcagcagctgaagacttcatgcctgttctaacaagaaaacagaaacagaaactcaag 39324775  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatc 135  Q
    |||||| |||||||||||||||| |||||||||||    
T  39324774 gtacaacaagtcttagcaaagcaacctactaaatc 39324740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 335
Target Start/End: Complemental strand, 21898358 - 21898205
Alignment:
Q  183 tggaatgttagaggtatcagtaactctgatactcgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccggtgg 281  Q
    ||||||||| |||||||  |||| ||||| |||||  || ||||||||| ||||| | | || ||||||||   |||||||||| | ||||||||  |||    
T  21898358 tggaatgttcgaggtattggtaattctgacactcgaactactttaaaaaatttatgtttatcccacaaaccctctctaatttttgtggcggaaccaatgg 21898259  T
Q  282 ttaattttgcacaaattcctgcttggtattggccttctataggtgtttctaaat 335  Q
    |||||||||| |||||||||||||||||||||| ||| ||||| || |||||||    
T  21898258 ttaattttgctcaaattcctgcttggtattggcattccataggcgtatctaaat 21898205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 168 - 334
Target Start/End: Original strand, 35341440 - 35341607
Alignment:
Q  168 atgaatttcctatattggaatgttagaggtatcagtaactctgatactcgggctgcttt-aaaaatttatatatgtctcacaaacctattctaattttta 266  Q
    |||||||| || ||||||||| ||||||||||| ||||||||||| ||||   |||||| |||||  | |||||||||||||||||||| || |  ||||    
T  35341440 atgaattttctctattggaatattagaggtatcggtaactctgatgctcgaattgctttaaaaaaaatttatatgtctcacaaacctatccttacattta 35341539  T
Q  267 ttgcggaaccggtggttaattttgcacaaattcctgcttggtattggccttctataggtgtttctaaa 334  Q
    ||||||| ||   | |||||||||   | ||||||||||||||||||||  | || ||||||||||||    
T  35341540 ttgcggagccaaagattaattttgttaatattcctgcttggtattggccgacaattggtgtttctaaa 35341607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 5781667 - 5781428
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    ||||||||| ||||||| ||||| ||| ||||||||  |||||||||  |  ||||| |||| ||| ||  |||  |  || ||||| |||||||| ||     
T  5781667 tggtttagacttgtgggaaagagatcgtgaatatgacaaaagatcagatgaggaagatttcacgccggtcctaactacgaagcagaaacagaaacttaaa 5781568  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtat 199  Q
     ||||| |||||||  | ||||||||| ||||| | | ||| ||||||||   ||||||| || |||| ||||||| || ||||||| ||||||||||||    
T  5781567 ttacaacaagtcttgccgaagcagccttctaaaactcgtgctcggggtgatcctcattcgactaatcaatgaattttctctattggattgttagaggtat 5781468  T
Q  200 cagtaactctgatactcgggctgctttaaa-aatttatat 238  Q
    || ||| ||||||||||||  ||||||||| |||||||||    
T  5781467 cattaattctgatactcggattgctttaaagaatttatat 5781428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 195
Target Start/End: Original strand, 11725139 - 11725334
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    |||||||||||||||||  | |||||| ||||||||||||||||||||    ||||||||||   | ||| | | |||||||||||| |||||||| ||     
T  11725139 tggtttagatttgtgggacatagttcgtgaatatgatgaaagatcagcgaaggaagacttcacatcggttcttacaagaaaacagaaacagaaacttaaa 11725238  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagag 195  Q
    ||  || |||| |||||||  ||| || ||||| ||| ||| ||||||||  |||  ||| || ||| ||||||||||| ||||||||||||||||    
T  11725239 gttaaacaagttttagcaacacagtcttctaaaacccgtgctcggggtgaacatctctcgacttatcaatgaatttcctctattggaatgttagag 11725334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 181 - 243
Target Start/End: Complemental strand, 29998883 - 29998821
Alignment:
Q  181 attggaatgttagaggtatcagtaactctgatactcgggctgctttaaaaatttatatatgtc 243  Q
    ||||||||||||||||||||| ||||| ||||||| ||  |||||||||||||||||||||||    
T  29998883 attggaatgttagaggtatcaataactttgatacttggattgctttaaaaatttatatatgtc 29998821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 35341254 - 35341309
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaag 56  Q
    ||||||||||||||| | |||||| || |||||||||| |||||||||||||||||    
T  35341254 tggtttagatttgtgagaaagagtacgtgaatatgatgcaagatcagcagctgaag 35341309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 197
Target Start/End: Complemental strand, 5785001 - 5784859
Alignment:
Q  56 gacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatc 155  Q
    ||||||||||||||| | | | |||| ||||| ||||| || ||||| ||  | ||| | ||||| || ||| ||||||||| ||| ||||||||||| |    
T  5785001 gacttcatgcctgttcttacacgaaatcagaaacagaagcttaaggtgcagcacgtccttgcaaaacaaccttctaaatcccgtgcacggggtgacaagc 5784902  T
Q  156 attcgtctgatca-tgaatttcctatattggaatgttagaggt 197  Q
    | ||  || |||| ||| |||||||||||||||||||||||||    
T  5784901 aatccactaatcaatgagtttcctatattggaatgttagaggt 5784859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 108; Significance: 3e-54; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 194
Target Start/End: Complemental strand, 3728281 - 3728093
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaag 100  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||      |||||||||||    
T  3728281 tggtttagatttgtgggcaagagtctgagaatatgatgaaagatcagcagctgaagacttaatgcctgttctaacaagaaaac------agaaactcaag 3728188  T
Q  101 gtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttaga 194  Q
    ||||||||| |||||||||||||||||||||||||   || | ||||||||||||||| | |||||| ||||||||||| |||||||||||||||    
T  3728187 gtacaaaaactcttagcaaagcagcctactaaatcttgtgtctggggtgacaatcatttgactgatcaatgaatttcctctattggaatgttaga 3728093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 21 - 258
Target Start/End: Original strand, 28779780 - 28780017
Alignment:
Q  21 gagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaaaagtcttagcaaa 120  Q
    ||||||| |||||||||||||||||| | |||||||||||||  |||||| ||| |||||| ||||| |||||| | ||  ||||| | |||||||||||    
T  28779780 gagttcgtgaatatgatgaaagatcaactgctgaagacttcacacctgttctaacaagaaagcagaaacagaaaattaaattacaataggtcttagcaaa 28779879  T
Q  121 gcagcctactaaatcccatgcccggggtgacaatcattcgtctgat-catgaatttcctatattggaatgttagaggtatcagtaactctgatactcggg 219  Q
    ||| ||||||||| ||| | | |||||||  |||||| || ||| | ||||||||| || |||||||||||||||||||||||||| ||  ||||||||     
T  28779880 gcaacctactaaaacccgttctcggggtggtaatcatccgactgctccatgaattttctctattggaatgttagaggtatcagtaattc--atactcgga 28779977  T
Q  220 ctgctttaaa-aatttatatatgtctcacaaacctattct 258  Q
     ||||||||| ||||||||| |||||||||||||| ||||    
T  28779978 ttgctttaaagaatttatatctgtctcacaaaccttttct 28780017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 20 - 269
Target Start/End: Complemental strand, 24574231 - 24573981
Alignment:
Q  20 agagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaaaagtcttagcaa 119  Q
    |||||||| |||||||||| ||| |||||  | ||||||||||  || ||  | | ||| || ||||| |||||| | || || ||| |||||||||| |    
T  24574231 agagttcgtgaatatgatgcaaggtcagctacagaagacttcacaccggtccttacaaggaagcagaaacagaaaattaaagtgcaacaagtcttagcta 24574132  T
Q  120 agcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatcagtaactctgatactcgg 218  Q
    || ||||  ||||| ||| |||| ||||||| ||||||  | ||||||| ||||||||||  |||||||||||||||||||| |||| | ||||||||||    
T  24574131 agaagccccctaaaacccgtgcctggggtgataatcatcagactgatcaatgaatttcctccattggaatgttagaggtatcggtaattatgatactcgg 24574032  T
Q  219 gctgctttaaaaatttatatatgtctcacaaacctattctaatttttattg 269  Q
      |||||||||||||||||||||||||| |||||| |||| ||||||||||    
T  24574031 attgctttaaaaatttatatatgtctcaaaaacctgttctgatttttattg 24573981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 14073385 - 14073609
Alignment:
Q  6 tagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtaca 105  Q
    ||||||||||||  |||||||| |||||||||||| ||||||| |||||||||||||  || ||  ||| ||| ||||| ||  ||||| | || |||||    
T  14073385 tagatttgtgggacagagttcgtgaatatgatgaatgatcagctgctgaagacttcacaccggtcctaacaaggaaacaaaaatagaaaattaaagtaca 14073484  T
Q  106 aaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgat-catgaatttcctatattggaatgttagaggtatcagta 204  Q
    | | |||||||||||||||||||||||| ||| |   |||||||  |||||| |  ||| | ||||||||| || ||||||||||||||||||||| |||    
T  14073485 acaggtcttagcaaagcagcctactaaaacccgttatcggggtggtaatcatccaactgctccatgaattttctttattggaatgttagaggtatcggta 14073584  T
Q  205 actctgatactcgggctgctttaaa 229  Q
    | |||||||||| |  |||||||||    
T  14073585 attctgatactcagattgctttaaa 14073609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 229
Target Start/End: Original strand, 14383413 - 14383637
Alignment:
Q  6 tagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtaca 105  Q
    ||||||||||||  |||||||| |||||||||||| ||||||| |||||||||||||  || ||  ||| ||| ||||| ||  ||||| | || |||||    
T  14383413 tagatttgtgggacagagttcgtgaatatgatgaatgatcagctgctgaagacttcacaccggtcctaacaaggaaacaaaaatagaaaattaaagtaca 14383512  T
Q  106 aaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgat-catgaatttcctatattggaatgttagaggtatcagta 204  Q
    | | |||||||||||||||||||||||| ||| |   |||||||  |||||| |  ||| | ||||||||| || ||||||||||||||||||||| |||    
T  14383513 acaggtcttagcaaagcagcctactaaaacccgttatcggggtggtaatcatccaactgctccatgaattttctttattggaatgttagaggtatcggta 14383612  T
Q  205 actctgatactcgggctgctttaaa 229  Q
    | |||||||||| |  |||||||||    
T  14383613 attctgatactcagattgctttaaa 14383637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 273 - 329
Target Start/End: Complemental strand, 3728091 - 3728035
Alignment:
Q  273 aaccggtggttaattttgcacaaattcctgcttggtattggccttctataggtgttt 329  Q
    ||||| ||||||||||||||||||||  ||||||||||||| |||||||||||||||    
T  3728091 aaccgatggttaattttgcacaaatttttgcttggtattggtcttctataggtgttt 3728035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 9411598 - 9411509
Alignment:
Q  108 aagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagagg 196  Q
    ||||||| | |||||||||| ||||| | | ||| ||||||||||||||| |  ||| ||| |||||||||| |||||||||||||||||    
T  9411598 aagtcttggtaaagcagcctcctaaaactcgtgctcggggtgacaatcatacaactgctcaatgaatttcctctattggaatgttagagg 9411509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 277
Target Start/End: Complemental strand, 11295927 - 11295663
Alignment:
Q  8 gatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaa 107  Q
    |||||||||| ||||||||| ||||||||  |||||||||| |||||||| |||||||| ||  |||  || || ||||  ||  |||| ||  |||||     
T  11295927 gatttgtgggaaagagttcgtgaatatgacaaaagatcagctgctgaagatttcatgccggtcctaaataggaagcagagacatgaacttaaattacaac 11295828  T
Q  108 aagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatcagtaac 206  Q
    |||||||  | ||||||||||||||| | ||||| | ||||||    |||| | ||||||| ||||||| || | ||| |||||       ||| ||||     
T  11295827 aagtcttgccgaagcagcctactaaaactcatgctcagggtgatccacatttgactgatcaatgaattttctctgttgaaatgt-------atcggtaat 11295735  T
Q  207 tctgatactcgggctgctttaaa-aatttatatatgtctcacaaacctattctaatttttattgcggaaccg 277  Q
    ||||||||||||  ||| | ||| ||||||||| | ||||| |||||||| || ||||||||||||||||||    
T  11295734 tctgatactcggattgcgtgaaagaatttatatttttctcataaacctatgcttatttttattgcggaaccg 11295663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 63137 - 63282
Alignment:
Q  53 gaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgaca 152  Q
    |||| ||||||||||||| ||| ||||||||| || || ||||| ||||||||| |||||||||||||||||||||||||||||| |||||| |||||||    
T  63137 gaaggcttcatgcctgttctaacaagaaaacataaacaaaaacttaaggtacaacaagtcttagcaaagcagcctactaaatcccgtgcccgaggtgaca 63236  T
Q  153 atcattcgtctgatc-atgaatttcctatattggaatgttagaggt 197  Q
    |||||| | || ||| ||||||||| | ||||||||||||||||||    
T  63237 atcatttgactaatcaatgaatttcatctattggaatgttagaggt 63282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 60785 - 60841
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaaga 57  Q
    |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||    
T  60785 tggtttagatttgtgggcaagagtccgagaatacgatgaaagatcagcagctgaaga 60841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 6e-34; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 2 - 269
Target Start/End: Complemental strand, 19826981 - 19826712
Alignment:
Q  2 ggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaagg 101  Q
    |||||||| ||||||| ||||||||| ||||||||  |||||||||  |  ||||| |||| ||| ||  |||  || || ||||| |||||||| ||      
T  19826981 ggtttagacttgtgggaaagagttcgtgaatatgacaaaagatcagttgaggaagatttcacgccggtcctaactaggaagcagaaacagaaacttaaat 19826882  T
Q  102 tacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatc 200  Q
    ||||| |||||||  ||||||||||||||||| ||| ||| ||||||||   || |||| ||||||| ||||||| || ||||||| |||||||||||||    
T  19826881 tacaacaagtcttgccaaagcagcctactaaaacccgtgctcggggtgatcctcgttcgactgatcaatgaattttctctattggattgttagaggtatc 19826782  T
Q  201 agtaactctgatactcgggctgctttaaa-aatttatatatgtctcacaaacctattctaatttttattg 269  Q
    | ||| ||||||||||||  ||||||||| ||||||||| ||||||| |||||||| |  ||||||||||    
T  19826781 attaattctgatactcggattgctttaaagaatttatatttgtctcataaacctatgcacatttttattg 19826712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 20 - 264
Target Start/End: Complemental strand, 2929126 - 2928880
Alignment:
Q  20 agagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaaaagtcttagcaa 119  Q
    |||||||| |||||||||| ||  ||||  ||||||||||||| ||| ||| | | ||  || ||||| |||||| | ||  | ||| ||||||| || |    
T  2929126 agagttcgtgaatatgatgcaacgtcagttgctgaagacttcacgccggttcttacaaagaagcagaaacagaaaattaaattgcaacaagtcttggcta 2929027  T
Q  120 agcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatcagtaactctgatactcgg 218  Q
    |||||||| ||||| | | ||| ||||||||||||||| || ||| | | |||||||||| |||||||||||||||||||||  ||| ||||||||||||    
T  2929026 agcagcctcctaaaacacgtgctcggggtgacaatcatacgactgcttaatgaatttcctctattggaatgttagaggtatcgataattctgatactcgg 2928927  T
Q  219 gctgctttaaa-aatttatatatgtctcacaaacctattctaatttt 264  Q
      ||||||||| |||||||| |||||||| |||| | ||||||||||    
T  2928926 attgctttaaagaatttatacatgtctcataaacttgttctaatttt 2928880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 20 - 269
Target Start/End: Original strand, 51661198 - 51661448
Alignment:
Q  20 agagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaaaagtcttagcaa 119  Q
    |||||||| |||||||||| ||| ||||| || ||||||||||  || ||  | | ||| || ||||| |||||| | || || ||  ||||||| || |    
T  51661198 agagttcgtgaatatgatgcaaggtcagctgcagaagacttcacaccggtccttacaaggaagcagaaacagaaaattaaagtgcagcaagtcttggcta 51661297  T
Q  120 agcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagaggtatcagtaactctgatactcgg 218  Q
    |||||||  ||||| ||| |||||||||||| |||||   | ||| || |||||||| ||  |||||||||||||||||||| |||| | ||||||||||    
T  51661298 agcagccccctaaaacccgtgcccggggtgataatcaccagactgctcaatgaatttgctccattggaatgttagaggtatcggtaattatgatactcgg 51661397  T
Q  219 gctgctttaaaaatttatatatgtctcacaaacctattctaatttttattg 269  Q
      |||||||||||||||||||||||||| || | | |||| ||||||||||    
T  51661398 attgctttaaaaatttatatatgtctcaaaagcatgttctgatttttattg 51661448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 6 - 229
Target Start/End: Complemental strand, 5814044 - 5813821
Alignment:
Q  6 tagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtaca 105  Q
    |||||||||||   | |||||| |||||||||||| ||||| | ||| |||||||||  || ||  ||| ||| ||||| || |||||| | || |||||    
T  5814044 tagatttgtggcacaaagttcgtgaatatgatgaacgatcaactgct-aagacttcacaccggtcctaacaaggaaacaaaaacagaaaattaaagtaca 5813946  T
Q  106 aaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgat-catgaatttcctatattggaatgttagaggtatcagta 204  Q
    | | |||||||||||| ||||||||||| ||| | | |||||||  |||||| |  ||| | ||||||||| || |||||||||||||||||||||||||    
T  5813945 acatgtcttagcaaagaagcctactaaaacccgttctcggggtggtaatcatccaactgctccatgaattttctctattggaatgttagaggtatcagta 5813846  T
Q  205 actctgatactcgggctgctttaaa 229  Q
    | ||||||||| ||  |||||||||    
T  5813845 attctgatacttggattgctttaaa 5813821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 3581070 - 3581015
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaag 56  Q
    ||||||||||||||||| |||||| ||||| |||||||   |||||||||||||||    
T  3581070 tggtttagatttgtgggaaagagtccgagagtatgatgctcgatcagcagctgaag 3581015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 14678461 - 14678346
Alignment:
Q  210 gatactcgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccggtggttaattttgcacaaattcctgcttggt 308  Q
    |||||||||  ||||||||||| ||||| | |||| || ||||| | | | |||||| | ||||||||  ||||||  ||||| ||||||||| ||||||    
T  14678461 gatactcggcttgctttaaaaaatttatttttgtcgcataaaccaactattatttttgtggcggaaccaatggttagctttgctcaaattccttcttggt 14678362  T
Q  309 attggccttctatagg 324  Q
    |||||||||| |||||    
T  14678361 attggccttcgatagg 14678346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 47166528 - 47166473
Alignment:
Q  1 tggtttagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaag 56  Q
    ||||||||||||||||| |||||| ||||| |||||||   |||||||||||||||    
T  47166528 tggtttagatttgtgggaaagagtccgagagtatgatgctcgatcagcagctgaag 47166473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0281 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0281
Description:

Target: scaffold0281; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 168 - 335
Target Start/End: Original strand, 6840 - 7008
Alignment:
Q  168 atgaatttcctatattggaatgttagaggtatcagtaactctgatactcgggctgctttaaa-aatttatatatgtctcacaaacctattctaattttta 266  Q
    |||||| |||| ||||||||||||||||||||| ||||  ||||||||||   ||||||||| ||||| ||| ||||||||||||||| |||||||||||    
T  6840 atgaatatcctttattggaatgttagaggtatcggtaatgctgatactcgtcttgctttaaagaatttttatttgtctcacaaacctagtctaattttta 6939  T
Q  267 ttgcggaaccggtggttaattttgcacaaattcctgcttggtattggccttctataggtgtttctaaat 335  Q
    |||| || ||  || ||||||||   ||| ||||||||||||||||||| ||||| || || |||||||    
T  6940 ttgctgagcctatgattaattttcatcaagttcctgcttggtattggccgtctatcggagtgtctaaat 7008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 168 - 307
Target Start/End: Complemental strand, 15769 - 15629
Alignment:
Q  168 atgaatttcctatattggaatgttagaggtatcagtaactctgatactcgggctgctttaa-aaatttatatatgtctcacaaacctattctaattttta 266  Q
    |||||||||||  ||||| ||| ||||| |||| |||| ||||||||||||  |||||||| ||||||||||||||||| ||||||||| || ||||||     
T  15769 atgaatttcctccattgggatggtagagatatcggtaattctgatactcggattgctttaataaatttatatatgtctcgcaaacctatgcttatttttc 15670  T
Q  267 ttgcggaaccggtggttaattttgcacaaattcctgcttgg 307  Q
    |||||||||   ||||||||||||| |||||||| ||||||    
T  15669 ttgcggaacaaatggttaattttgctcaaattccagcttgg 15629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 268
Target Start/End: Original strand, 103264 - 103511
Alignment:
Q  22 agttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaaaagtcttagcaaag 121  Q
    |||||| |||||||||| ||| ||||| || ||||||||||  || ||  | | ||| || ||||  |||||| | || || ||| ||||||| || |||    
T  103264 agttcgtgaatatgatgcaaggtcagctgcagaagacttcacaccggtccttacaaggaagcagacacagaaaattaaagtgcaacaagtcttggctaag 103363  T
Q  122 cagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatcagtaactctgatactcgggc 220  Q
    |||||  ||||| ||| |||||||||||| ||||||  | ||| ||| ||||||| ||  |||||||||||||||||||| |||| | |||||||| |      
T  103364 cagccccctaaaacccgtgcccggggtgataatcatcagactgctcaatgaattttctcaattggaatgttagaggtatcggtaattatgatactcagat 103463  T
Q  221 tgctttaaaaatttatatatgtctcacaaacctattctaatttttatt 268  Q
    ||||||||| |||||||||||||||| |||||| |||| |||||||||    
T  103464 tgctttaaagatttatatatgtctcaaaaacctgttctgatttttatt 103511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 117 - 335
Target Start/End: Complemental strand, 60065 - 59845
Alignment:
Q  117 caaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatttcctatattggaatgttagaggtatcagtaactctgatact 215  Q
    ||||||||||| ||||||||| ||| |||||||||||  | ||   |||||| ||||| | || | |||||||||| |||||||  |||| ||||| |||    
T  60065 caaagcagcctcctaaatcccgtgcgcggggtgacaacaactccattgatcaatgaatattctcttttggaatgttcgaggtattggtaattctgacact 59966  T
Q  216 cgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccggtggttaattttgcacaaattcctgcttggtattggc 314  Q
    ||  |||||||||||| ||||| | | || ||||||||   | |||||||| | ||||||||  || |||||||||| ||||||||||||||||||||||    
T  59965 cgaactgctttaaaaaatttatgtttatcccacaaaccatctataatttttgtggcggaaccaatgattaattttgctcaaattcctgcttggtattggc 59866  T
Q  315 cttctataggtgtttctaaat 335  Q
     ||| ||||| || |||||||    
T  59865 attccataggcgtatctaaat 59845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 6 - 258
Target Start/End: Complemental strand, 2599 - 2345
Alignment:
Q  6 tagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtaca 105  Q
    |||||||||||   ||| |||| |||||||||||||||||||| |||||||||||||  | |||  ||| ||| || |||||  ||||| | || |||||    
T  2599 tagatttgtggaacagatttcgtgaatatgatgaaagatcagctgctgaagacttcacacatgtcctaacaaggaagcagaaatagaaaattaaagtaca 2500  T
Q  106 aaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgat-catgaatttcctatattggaatgttagaggtatcagta 204  Q
    | | |||||||||||||| ||||||||| ||  | | |||| ||  |||||| || ||| | ||||| ||| ||  |||||||||||||||||||| |||    
T  2499 acaggtcttagcaaagcaacctactaaaacctgttctcgggctggtaatcatccgactgctccatgatttttctcaattggaatgttagaggtatccgta 2400  T
Q  205 actctgatactcgggctgctttaaa-aatttatatatgtctcacaaacctattct 258  Q
    | |||||  || ||  ||||||||| ||||||||| |||||||||||||| ||||    
T  2399 attctgacgcttggattgctttaaagaatttatatttgtctcacaaaccttttct 2345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0265 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 183 - 335
Target Start/End: Complemental strand, 23864 - 23711
Alignment:
Q  183 tggaatgttagaggtatcagtaactctgatactcgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccggtgg 281  Q
    ||||||||| |||||||  |||| ||||| |||||  |||||||||||| ||||| | | || ||||||||   |||||||||| | ||||||||  |||    
T  23864 tggaatgttcgaggtattggtaattctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccctctctaatttttgtggcggaaccaatgg 23765  T
Q  282 ttaattttgcacaaattcctgcttggtattggccttctataggtgtttctaaat 335  Q
    |||||||||| |||||||||| ||||||||||| ||| ||||| || |||||||    
T  23764 ttaattttgctcaaattcctgattggtattggcattccataggcgtatctaaat 23711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0607
Description:

Target: scaffold0607; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 23 - 229
Target Start/End: Complemental strand, 773 - 566
Alignment:
Q  23 gttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtacaaaaagtcttagcaaagc 122  Q
    ||||| ||||||||||||  ||||||  ||||||||||||  || ||  ||| ||| ||||| || |||||| | || |||||| | ||||||| |||||    
T  773 gttcgtgaatatgatgaacaatcagctactgaagacttcacaccagtcctaacaaggaaacataaacagaaaattaaagtacaacatgtcttagtaaagc 674  T
Q  123 agcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagaggtatcagtaactctgatactcgggct 221  Q
    ||||||||||| ||| | | |||||||  |||||| |  ||  || |||||||| || |||||||||||||||||| || |||| |||||||||| |  |    
T  673 agcctactaaaacccgttctcggggtggtaatcatccaactactcaatgaattttctctattggaatgttagaggtgtcggtaattctgatactcagatt 574  T
Q  222 gctttaaa 229  Q
    ||||||||    
T  573 gctttaaa 566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0607; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 6 - 216
Target Start/End: Complemental strand, 6723 - 6515
Alignment:
Q  6 tagatttgtgggcaagagttcgagaatatgatgaaagatcagcagctgaagacttcatgcctgttttaataagaaaacagaagcagaaactcaaggtaca 105  Q
    |||||||||||   | |||||| |||||||||||| ||||||| |||||||||||||  || ||  ||| ||| |||||||| |||||| | || ||||     
T  6723 tagatttgtggcacaaagttcgtgaatatgatgaacgatcagctgctgaagacttcacaccggtgctaacaaggaaacagaaacagaaaattaaagtac- 6625  T
Q  106 aaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatc-atgaatttcctatattggaatgttagaggtatcagta 204  Q
      | |||||||||||||||||||||||| ||| | | | |||||  |||||| |  ||  || ||||||||  | ||||| ||||||||||||||| |||    
T  6624 --atgtcttagcaaagcagcctactaaaacccgttctcagggtggtaatcatccaacttctcaatgaattttatctattgaaatgttagaggtatcggta 6527  T
Q  205 actctgatactc 216  Q
    | ||||||||||    
T  6526 attctgatactc 6515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0770 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0770
Description:

Target: scaffold0770; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 308
Target Start/End: Original strand, 6060 - 6186
Alignment:
Q  183 tggaatgttagaggtatcagtaactctgatactcgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccggtgg 281  Q
    ||||||||| |||||||  |||| ||||| |||||  |||||||||||| ||||| | | || ||||||||   |||||||||| | ||||||||  |||    
T  6060 tggaatgttcgaggtattggtaattctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccatctctaatttttgtggcggaaccaatgg 6159  T
Q  282 ttaattttgcacaaattcctgcttggt 308  Q
    |||||||||| ||||||||||||||||    
T  6160 ttaattttgctcaaattcctgcttggt 6186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 335
Target Start/End: Original strand, 11701 - 11962
Alignment:
Q  76 aagaaaacagaagcagaaactcaaggtacaaaaagtcttagcaaagcagcctactaaatcccatgcccggggtgacaatcattcgtctgatca-tgaatt 174  Q
    |||||| || || |||||| | ||||| ||| ||||| |  ||||||||||||||||||||| ||| ||| ||||||||   ||   |||||| |||||     
T  11701 aagaaatcaaaaacagaaaattaaggtgcaacaagtcctttcaaagcagcctactaaatcccgtgcacggagtgacaatatctccagtgatcaatgaata 11800  T
Q  175 tcctatattggaatgttagaggtatcagtaactctgatactcgggctgctttaaaaa---tttatatatgtctcacaaacctattctaatttttattgcg 271  Q
    | || | ||||||||||||||||||  |||||||||| ||| |  ||| ||||||||   ||| | |||  | ||||||||   ||| |||||| | | |    
T  11801 ttcttttttggaatgttagaggtattggtaactctgacactagaactggtttaaaaaaaatttgtttat--cccacaaaccctctcttatttttgtggtg 11898  T
Q  272 gaaccggtggttaattttgcacaaattcctgcttggtattggccttctataggtgtttctaaat 335  Q
    |||||  ||||||||||||| |||||||||||||||||||||||||| ||| | || |||||||    
T  11899 gaaccaatggttaattttgctcaaattcctgcttggtattggccttccatatgcgtgtctaaat 11962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 183 - 308
Target Start/End: Original strand, 104358 - 104484
Alignment:
Q  183 tggaatgttagaggtatcagtaactctgatactcgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccggtgg 281  Q
    ||||||||| |||||||  |||| ||||| |||||  |||||||||||| ||||| | | || ||||||||   |||||||||| | ||||||||  |||    
T  104358 tggaatgttcgaggtattggtaattctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccatctctaatttttgtggcggaaccaatgg 104457  T
Q  282 ttaattttgcacaaattcctgcttggt 308  Q
    |||||||||| ||||||||||||||||    
T  104458 ttaattttgctcaaattcctgcttggt 104484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 335
Target Start/End: Complemental strand, 53995 - 53866
Alignment:
Q  207 tctgatactcgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccggtggttaattttgcacaaattcctgctt 305  Q
    ||||| |||||  |||||||||||| ||||| | | || ||||||||   |||||||||| | ||||||||  ||||||||||||| |||||||||||||    
T  53995 tctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccctctctaatttttgtggcggaaccaatggttaattttgctcaaattcctgctt 53896  T
Q  306 ggtattggccttctataggtgtttctaaat 335  Q
    ||||||| | ||| ||||| || |||||||    
T  53895 ggtattgacattccataggcgtatctaaat 53866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 207 - 335
Target Start/End: Original strand, 144639 - 144768
Alignment:
Q  207 tctgatactcgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccggtggttaattttgcacaaattcctgctt 305  Q
    ||||| |||||  |||||||||||| ||||| | | || ||||||||   |||||||||| | ||||||||  ||||||||||||| |||||||||||||    
T  144639 tctgacactcgaactgctttaaaaaatttatgtttatcccacaaaccctctctaatttttgtggcggaaccaatggttaattttgctcaaattcctgctt 144738  T
Q  306 ggtattggccttctataggtgtttctaaat 335  Q
    ||||||| | ||| ||||| || |||||||    
T  144739 ggtattgacattccataggcgtatctaaat 144768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 324
Target Start/End: Complemental strand, 39350 - 39205
Alignment:
Q  180 tattggaatgttagaggtatcagtaactctgatactcgggctgctttaaaaa-tttatatatgtctcacaaacctattctaatttttattgcggaaccgg 278  Q
    |||||||||||| | |||||  |||| || |||||||||  ||||||||||| ||||| | |||| || ||||| | | | |||||| | ||||||||      
T  39350 tattggaatgttcgcggtattggtaattccgatactcggcttgctttaaaaaatttatttttgtcgcataaaccaactattatttttgtggcggaaccaa 39251  T
Q  279 tggttaattttgcacaaattcctgcttggtattggccttctatagg 324  Q
    ||||||  ||||| ||||||||| |||||||||||||||| |||||    
T  39250 tggttagctttgctcaaattccttcttggtattggccttcgatagg 39205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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